Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3l22
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.10 |||6-phosphogluconolactonase |Schizosaccharomyces po...   109   5e-25
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    28   1.1  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    26   5.8  

>SPCC16C4.10 |||6-phosphogluconolactonase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score =  109 bits (261), Expect = 5e-25
 Identities = 67/182 (36%), Positives = 97/182 (53%), Gaps = 12/182 (6%)
 Frame = +3

Query: 123 DEEEIIRKLSTYIQKISNDAILNRNKFVVGLSGGSVVKYLCEGLPQVE-TDWSKWTLAFC 299
           D   + + L  ++++ S  +I     F + LSGGS+ K L EGL Q    ++SKW + F 
Sbjct: 8   DVSLVAKALGAFVKEKSEASIKRHGVFTLALSGGSLPKVLAEGLAQQRGIEFSKWEVFFA 67

Query: 300 DERVVPEDSSDSTFGIYKKDLIPKTELKESQFI------TIKQGAT-AQETAKDYIEKLR 458
           DER+VP D  +S + + KK +  K E  + + I       +K+     Q  A +Y ++L 
Sbjct: 68  DERIVPLDDENSNYALCKKLIFDKFEGFDPKKIHTINPELLKENPIDPQNVADEYEKQLV 127

Query: 459 KVXXXXXXXXXXXXXXM----GPDGHTCSLFPGHKLLEETEDKVAAITDSPKPPPERITL 626
            V              +    GPDGHTCSLFP H++L+E    VA +TDSPKPP +RITL
Sbjct: 128 HVFANSSTVKVPVFDLLLLGCGPDGHTCSLFPDHEVLQEDVAWVAPVTDSPKPPKDRITL 187

Query: 627 TL 632
           TL
Sbjct: 188 TL 189


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +3

Query: 255 PQVETDWSKWTLAFCDERVVPEDSSDSTFGIYKKDLIPKTELKESQFITIKQGATAQETA 434
           P+V+     W L + DE+          FG  +K ++PK     + F T +Q     ++A
Sbjct: 284 PEVKKALENWFLCYADEKDPAHQDEVEVFG--RKIIVPKASGNVAWF-TFEQLCGEPKSA 340

Query: 435 KDYI 446
            DY+
Sbjct: 341 ADYL 344


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 351 KKDLIPKTELKESQFITIKQGATAQETAKDYIEK 452
           K D +    +KES+  T K   + Q+  ++Y+EK
Sbjct: 402 KVDFVTLNLVKESKTYTKKTSVSLQKAIREYVEK 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,607
Number of Sequences: 5004
Number of extensions: 46882
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)