Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3l22
(680 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1190 + 24685623-24685807,24685914-24686049,24687637-24688158 113 9e-26
03_04_0078 - 17093767-17093828,17094270-17094699,17095837-170959... 111 5e-25
09_06_0039 - 20423829-20424308,20424664-20424729,20425969-204261... 91 1e-18
08_02_1479 + 27390852-27391059,27392017-27392138,27392227-273923... 62 3e-10
12_02_0414 + 18824347-18825161,18826018-18828229 35 0.069
04_04_1438 - 33609242-33609349,33609571-33609663,33609840-336098... 29 4.5
>07_03_1190 + 24685623-24685807,24685914-24686049,24687637-24688158
Length = 280
Score = 113 bits (273), Expect = 9e-26
Identities = 65/180 (36%), Positives = 92/180 (51%), Gaps = 12/180 (6%)
Frame = +3
Query: 129 EEIIRKLSTYIQKISNDAILNRNKFVVGLSGGSVVKYL---CEGLPQVETDWSKWTLAFC 299
+E+ L+ YI ++S ++ R F + LSGG +V +L CE DWSKW + +
Sbjct: 24 DEMSTDLAEYISQVSEISVKERGYFAIALSGGPLVSFLGKLCEAPYNKTLDWSKWYIFWS 83
Query: 300 DERVVPEDSSDSTFGIYKKDLIPKTELKESQFITIKQGATAQETAKDY---IEKLRKVXX 470
DER V ++ ++S + I K+ + K + +I AT ++ A DY I +L KV
Sbjct: 84 DERAVAKNHAESNYRITKEGFLSKVPILNGHVYSINDNATVEDAATDYEFVIRQLVKVRT 143
Query: 471 XXXXXXXXXXXX------MGPDGHTCSLFPGHKLLEETEDKVAAITDSPKPPPERITLTL 632
MG DGH SLFP H LE +D + ITDSP+PPPERIT TL
Sbjct: 144 IGVSESNDCPKFDLILLSMGSDGHVASLFPNHPSLELKDDWITYITDSPQPPPERITFTL 203
>03_04_0078 -
17093767-17093828,17094270-17094699,17095837-17095972,
17096081-17096265
Length = 270
Score = 111 bits (267), Expect = 5e-25
Identities = 64/180 (35%), Positives = 89/180 (49%), Gaps = 12/180 (6%)
Frame = +3
Query: 129 EEIIRKLSTYIQKISNDAILNRNKFVVGLSGGSVVKY---LCEGLPQVETDWSKWTLAFC 299
+E+ L+ YI ++S +I R F + LSGG ++ + LCE DWSKW + +
Sbjct: 24 DEMATDLAEYISQVSEISIKERGYFAIALSGGPLISFMRKLCEAPYNKTLDWSKWYIFWA 83
Query: 300 DERVVPEDSSDSTFGIYKKDLIPKTELKESQFITIKQGATAQETAKDY------IEKLRK 461
DER V ++ DS + K+D + K + +I T ++ A DY + K+R
Sbjct: 84 DERAVAKNHVDSYYKSTKEDFLSKVPILNGHVYSINDNVTVEDAATDYEFVIRQLVKIRT 143
Query: 462 VXXXXXXXXXXXXXXM---GPDGHTCSLFPGHKLLEETEDKVAAITDSPKPPPERITLTL 632
V + G DGH SLFP H LE +D V ITDSP PPPERIT TL
Sbjct: 144 VGVSESNDCPKFDLILLSIGSDGHVASLFPNHPALELKDDWVTYITDSPVPPPERITFTL 203
>09_06_0039 -
20423829-20424308,20424664-20424729,20425969-20426104,
20426222-20426415
Length = 291
Score = 90.6 bits (215), Expect = 1e-18
Identities = 65/202 (32%), Positives = 93/202 (46%), Gaps = 34/202 (16%)
Frame = +3
Query: 126 EEEIIRKLSTYIQKISNDAILNRNKFVVGLSGGSVVKYLCEGL--PQVET-DWSKWTLAF 296
EE++ L+ Y ++S R F V LSGGS++K + + P +++ DWSKW + +
Sbjct: 26 EEDLAVSLAKYTAELSAKLAAERGAFTVVLSGGSLIKNIRKLAEPPYLDSVDWSKWHVFW 85
Query: 297 CDERVVPEDSSDSTFGI----------------------YKKDLIPKTELKESQFITIKQ 410
DERVVP+D DS + + + + L+ + Q I
Sbjct: 86 VDERVVPKDHEDSNYKLALDGFLSKCTRSVTKTLVLLIQFTEPLLLSVPIPTGQVYAIND 145
Query: 411 GATAQETAKDYIEKLRKVXXXXXXXXXXXXXX---------MGPDGHTCSLFPGHKLLEE 563
+A+ A DY L+++ MGPDGH SLFPGH L+ E
Sbjct: 146 ALSAEGAADDYETCLKQLVKNGVIAMSQSTGFPRFDVMLLGMGPDGHIASLFPGHPLVNE 205
Query: 564 TEDKVAAITDSPKPPPERITLT 629
+ V I DSPKPPPERIT T
Sbjct: 206 NKKWVTYIKDSPKPPPERITFT 227
>08_02_1479 +
27390852-27391059,27392017-27392138,27392227-27392350,
27392641-27392702,27392778-27392859,27393338-27393410,
27397092-27397227,27397337-27397386,27397542-27397590,
27398352-27398831
Length = 461
Score = 62.5 bits (145), Expect = 3e-10
Identities = 27/41 (65%), Positives = 30/41 (73%)
Frame = +3
Query: 507 MGPDGHTCSLFPGHKLLEETEDKVAAITDSPKPPPERITLT 629
MGPDGH SLFPGH ++ E V+ I DSPKPPPERIT T
Sbjct: 357 MGPDGHVASLFPGHPVVNENLKWVSYIKDSPKPPPERITFT 397
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +3
Query: 255 PQVET-DWSKWTLAFCDERVVPEDSSDSTFGIYKKDLIPK 371
P +E +WSKW + + DERVVP+D +DS + + L+ K
Sbjct: 230 PYLEAVEWSKWHVFWVDERVVPKDHADSNYKLAMDGLLSK 269
>12_02_0414 + 18824347-18825161,18826018-18828229
Length = 1008
Score = 34.7 bits (76), Expect = 0.069
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 237 YLCEGLPQVETDWSKWTLAFCDERVVPEDSSDSTFGIYKK-DLIPKTELKESQFITIK 407
Y EGL +V++D W L CD +P+D + I +K D +P ++++ +K
Sbjct: 321 YRLEGLNEVDSDKLLWQLVGCDRNELPQDVQSHSVDIVRKCDGLPLALTGVAEYVRLK 378
>04_04_1438 -
33609242-33609349,33609571-33609663,33609840-33609884,
33610000-33610055,33610362-33610468,33610605-33610806,
33611068-33611122,33611129-33611167,33611664-33611725,
33611875-33611988,33612618-33612627,33612750-33612835,
33613008-33613377
Length = 448
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 568 SVSSSNL*PGNREHVCPSGPMPSRSKSNLKSSPPKT 461
S +SS L NR +CP P R+ S+ SSP T
Sbjct: 23 SAASSILRAPNRGRLCPGSPSVLRASSSSPSSPQPT 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,737,921
Number of Sequences: 37544
Number of extensions: 287754
Number of successful extensions: 886
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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