Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3l22
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-43|CAJ76962.1|  257|Caenorhabditis elegans Hypothetical p...    97   1e-20
Z99281-42|CAB16505.2|  269|Caenorhabditis elegans Hypothetical p...    97   1e-20
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    29   2.3  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    29   2.3  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    29   2.3  
Z48621-4|CAA88542.1|  160|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical ...    28   7.1  

>Z99281-43|CAJ76962.1|  257|Caenorhabditis elegans Hypothetical
           protein Y57G11C.3b protein.
          Length = 257

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 70/193 (36%), Positives = 107/193 (55%), Gaps = 10/193 (5%)
 Frame = +3

Query: 123 DEEEIIRKLSTYIQKISNDAILNRNKFV-VGLSGGSVVKYLCEG---LPQVETDWSKWTL 290
           DE+E+I +L  Y+++     +L++N  V +G+SGGS+ +   +    LPQ + +W +  +
Sbjct: 10  DEKELILQLRRYLEE-KLTYLLDQNGTVSIGVSGGSMPRVFSKAILSLPQEQLNWKRIRI 68

Query: 291 AFCDERVVPEDSSDSTFGIYKKDLIPKTELKESQFITIKQGATAQETAKDYIEKLRKVXX 470
              DER V  DS +S  G Y + L P  EL++  F+ ++       TA+ Y   LRK   
Sbjct: 69  FMVDERNVDLDSEESNQGEYLR-LFPN-ELRDV-FVPMQIFKDPCLTAQHYEISLRKYLL 125

Query: 471 XXXXXXXXXXXXM----GPDGHTCSLFPGHKLLEE-TE-DKVAAITDSPKPPPERITLTL 632
                       +    GPDGHT S+FPG + LE+ TE + V+ ITDSPKPPP RITLTL
Sbjct: 126 PEQLNNTARFDILFLGVGPDGHTASIFPGKERLEKITELNWVSVITDSPKPPPSRITLTL 185

Query: 633 SSYKWSKETVFLL 671
            + + +K   F++
Sbjct: 186 QTLQHAKNVAFII 198


>Z99281-42|CAB16505.2|  269|Caenorhabditis elegans Hypothetical
           protein Y57G11C.3a protein.
          Length = 269

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 70/193 (36%), Positives = 107/193 (55%), Gaps = 10/193 (5%)
 Frame = +3

Query: 123 DEEEIIRKLSTYIQKISNDAILNRNKFV-VGLSGGSVVKYLCEG---LPQVETDWSKWTL 290
           DE+E+I +L  Y+++     +L++N  V +G+SGGS+ +   +    LPQ + +W +  +
Sbjct: 22  DEKELILQLRRYLEE-KLTYLLDQNGTVSIGVSGGSMPRVFSKAILSLPQEQLNWKRIRI 80

Query: 291 AFCDERVVPEDSSDSTFGIYKKDLIPKTELKESQFITIKQGATAQETAKDYIEKLRKVXX 470
              DER V  DS +S  G Y + L P  EL++  F+ ++       TA+ Y   LRK   
Sbjct: 81  FMVDERNVDLDSEESNQGEYLR-LFPN-ELRDV-FVPMQIFKDPCLTAQHYEISLRKYLL 137

Query: 471 XXXXXXXXXXXXM----GPDGHTCSLFPGHKLLEE-TE-DKVAAITDSPKPPPERITLTL 632
                       +    GPDGHT S+FPG + LE+ TE + V+ ITDSPKPPP RITLTL
Sbjct: 138 PEQLNNTARFDILFLGVGPDGHTASIFPGKERLEKITELNWVSVITDSPKPPPSRITLTL 197

Query: 633 SSYKWSKETVFLL 671
            + + +K   F++
Sbjct: 198 QTLQHAKNVAFII 210


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 192  RNKFVVGLS-GGSVVKYLCEGLPQVETDWSKWTLAFCDERVVPEDSSDS 335
            R+ FV   S GG +V    + LP+     ++WT+ + D+   P+D  +S
Sbjct: 1851 RDDFVTSKSDGGQIVLVFNDELPEYLKPPNEWTIQYTDDAEQPKDQWES 1899


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 192  RNKFVVGLS-GGSVVKYLCEGLPQVETDWSKWTLAFCDERVVPEDSSDS 335
            R+ FV   S GG +V    + LP+     ++WT+ + D+   P+D  +S
Sbjct: 1914 RDDFVTSKSDGGQIVLVFNDELPEYLKPPNEWTIQYTDDAEQPKDQWES 1962


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 192  RNKFVVGLS-GGSVVKYLCEGLPQVETDWSKWTLAFCDERVVPEDSSDS 335
            R+ FV   S GG +V    + LP+     ++WT+ + D+   P+D  +S
Sbjct: 1914 RDDFVTSKSDGGQIVLVFNDELPEYLKPPNEWTIQYTDDAEQPKDQWES 1962


>Z48621-4|CAA88542.1|  160|Caenorhabditis elegans Hypothetical
           protein R07B1.5 protein.
          Length = 160

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 216 SGGSVVKYLCEGLPQVETD 272
           SG SV+ Y CE  P VETD
Sbjct: 90  SGCSVITYTCERTPNVETD 108


>AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical
           protein C54G6.2 protein.
          Length = 700

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 558 EETEDKVAAITDSPKPPPERITLTLSSYKWSKE 656
           ++TE   A I D P PPP    + L+S  W  +
Sbjct: 123 DDTEGDDADIDDLPTPPPPIYAVRLTSDSWENQ 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,126,008
Number of Sequences: 27780
Number of extensions: 264086
Number of successful extensions: 831
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)