Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3l22
(680 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 22 4.7
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 22 6.2
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 22 6.2
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 22 6.2
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 22 6.2
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 22 6.2
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 22 6.2
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 22 6.2
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 22 6.2
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 22 6.2
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 8.2
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 22.2 bits (45), Expect = 4.7
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = -2
Query: 565 VSSSNL*PGNREHVC 521
+ S+++ PG +EHVC
Sbjct: 528 IRSTDVIPGTQEHVC 542
Score = 21.8 bits (44), Expect = 6.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -3
Query: 231 RQSRQKVQLRIYFYSRSRRLKSFECMSI 148
+++ K+ L+ Y+RS L S+ C+ I
Sbjct: 672 QRNMYKLDLKNMKYTRSADLSSYNCVPI 699
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 21.8 bits (44), Expect = 6.2
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +3
Query: 588 TDSPKPPPERITL 626
T SPKP P R TL
Sbjct: 414 TSSPKPFPRRATL 426
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 6.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 15 SYNYYQEKQKFLYISMNY 68
+YN Y K LY ++NY
Sbjct: 90 NYNNYNNNYKPLYYNINY 107
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 6.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 15 SYNYYQEKQKFLYISMNY 68
+YN Y K LY ++NY
Sbjct: 90 NYNNYNNNYKPLYYNINY 107
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 6.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 15 SYNYYQEKQKFLYISMNY 68
+YN Y K LY ++NY
Sbjct: 90 NYNNYNNNYKPLYYNINY 107
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 6.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 15 SYNYYQEKQKFLYISMNY 68
+YN Y K LY ++NY
Sbjct: 90 NYNNYNNNYKPLYYNINY 107
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 15 SYNYYQEKQKFLYISMNY 68
+YN Y K LY ++NY
Sbjct: 323 NYNNYNNNYKPLYYNINY 340
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 15 SYNYYQEKQKFLYISMNY 68
+YN Y K LY ++NY
Sbjct: 323 NYNNYNNNYKPLYYNINY 340
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 15 SYNYYQEKQKFLYISMNY 68
+YN Y K LY ++NY
Sbjct: 323 NYNNYNNNYKPLYYNINY 340
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.8 bits (44), Expect = 6.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 15 SYNYYQEKQKFLYISMNY 68
+YN Y K LY ++NY
Sbjct: 312 NYNNYNNNYKPLYYNINY 329
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.4 bits (43), Expect = 8.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 576 VAAITDSPKPPPERITLTLSSYKWSKET 659
V+ + P PPP SS+ SKE+
Sbjct: 1853 VSGSPEPPPPPPRNHDQNNSSFNDSKES 1880
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,959
Number of Sequences: 438
Number of extensions: 3241
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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