Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3l19
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0040 + 20162923-20163255 34 0.099
02_05_0533 - 29818276-29818866 32 0.40
02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,176... 32 0.53
04_03_0922 + 20834195-20836603 31 0.70
01_06_1270 + 35886571-35886573,35886676-35886708,35887073-358872... 30 1.6
04_04_1343 - 32781101-32781364,32782470-32782791,32784346-32784740 30 2.1
09_04_0567 + 18585556-18586113 29 3.7
01_06_0319 - 28441082-28441102,28441630-28441701,28442568-284426... 29 4.9
09_06_0032 + 20353789-20353963,20354240-20354340,20354426-203545... 28 6.5
11_06_0123 + 20334350-20334553,20335059-20335490,20336052-203361... 28 8.6
11_06_0050 + 19631164-19631987,19632103-19634023 28 8.6
07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246,203... 28 8.6
02_01_0265 - 1754861-1755063,1755186-1755360,1755558-1755653,175... 28 8.6
>03_05_0040 + 20162923-20163255
Length = 110
Score = 34.3 bits (75), Expect = 0.099
Identities = 24/64 (37%), Positives = 36/64 (56%)
Frame = -2
Query: 398 SSFQLLWLALALVNFSISSSVLFALDEISSIDLLADVVMSSIDFFVCDNNSSVLLQAELA 219
+SF L+ ALA++ SIS +V + I S L+A + +S I + S+V L AE+
Sbjct: 5 TSFVLVLSALAIMTISISVAVTIVISTIVSTILVARLSVSGIVLVLLLPPSAVQLVAEIV 64
Query: 218 SSLI 207
S LI
Sbjct: 65 SILI 68
>02_05_0533 - 29818276-29818866
Length = 196
Score = 32.3 bits (70), Expect = 0.40
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Frame = +1
Query: 7 IAVDETVRYTPHPSDSSK-TLLKQEAVVTVQGVPLSSY------MEDLLTNKISLNAGKG 165
I V+E Y PHP + T +QE T++ PLS+ +E + N+ KG
Sbjct: 116 IEVEERSTYRPHPERPEEWTQFRQET--TIRCRPLSALAAVAEKVETRCAERFLQNSAKG 173
Query: 166 RQAIEWVIGKFDTEIKELASSA 231
R+ +E + + E ASSA
Sbjct: 174 REVVERICRYLEAEAAGAASSA 195
>02_01_0267 -
1766071-1766261,1766368-1766569,1766719-1766814,
1767414-1767560,1767635-1767800,1767907-1767973,
1772850-1772949,1773029-1773099,1773199-1773382,
1773784-1773929,1774484-1774663,1774737-1774824,
1775634-1775838,1775945-1776081,1776529-1776612,
1776718-1776894,1777050-1777194,1777642-1777763,
1777846-1778091,1778571-1778789,1779016-1779094,
1779178-1779257,1779291-1779320
Length = 1053
Score = 31.9 bits (69), Expect = 0.53
Identities = 20/76 (26%), Positives = 42/76 (55%)
Frame = +1
Query: 97 GVPLSSYMEDLLTNKISLNAGKGRQAIEWVIGKFDTEIKELASSACKSTDELLSQTKKSI 276
G + + E+L N +S N + ++ E VI D++ L + +S ++ L+ +K S+
Sbjct: 644 GKKIETRKEELKAN-LSTNLMRRQKEFEAVISSADSKTLSLEA---ESKEQELNSSKSSL 699
Query: 277 DDITTSARRSMDDISS 324
DD+T + ++D I++
Sbjct: 700 DDLTAMLKANVDAINN 715
>04_03_0922 + 20834195-20836603
Length = 802
Score = 31.5 bits (68), Expect = 0.70
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -2
Query: 320 EISSIDLLADVVMSSIDFFVCDNNSSVLLQAELASSLISVSNFP 189
E+SSI L+ + + + F CDN+S +L+ + + + V FP
Sbjct: 547 EVSSIGLIQHINLIKLIGFCCDNDSKLLVYEHMPNRSLDVHLFP 590
>01_06_1270 +
35886571-35886573,35886676-35886708,35887073-35887235,
35887307-35887437,35887593-35887730,35887814-35887912,
35888103-35888339
Length = 267
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 372 CQPEELKRGVICMPLQYIYRKRTALMTCHVHLCPSLFIIDMIYLITI 512
C+ E+++ V P YIYR + L TCH L SL I ++ +T+
Sbjct: 148 CKDPEMRKQVRSNP--YIYRGKLPLKTCHELLMVSLDIEKNLHEVTL 192
>04_04_1343 - 32781101-32781364,32782470-32782791,32784346-32784740
Length = 326
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 535 SLVFFFNQARDSWMKPIP 588
SLVFFFN D W++P+P
Sbjct: 263 SLVFFFNVHGDRWVEPLP 280
>09_04_0567 + 18585556-18586113
Length = 185
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Frame = +1
Query: 7 IAVDETVRYTPHPSDSSK-TLLKQEAVVTVQGVPLSS-------YMEDLLTNKISLNAGK 162
+ V+ET Y PHP + TL +QE +++ PL++ +E + NA +
Sbjct: 111 VHVEETCSYRPHPERPDEWTLFRQE--TSIRCAPLAAVAAWAAEMVERRCAERFRQNASQ 168
Query: 163 GRQAIEWV 186
GR+ +E +
Sbjct: 169 GREVVETI 176
>01_06_0319 -
28441082-28441102,28441630-28441701,28442568-28442627,
28442918-28443105,28444300-28444327,28444880-28444907,
28444942-28445163,28445238-28445409,28446224-28447468,
28447573-28447741,28447820-28448045,28449096-28449451,
28449530-28449724,28450655-28450864,28451729-28452004
Length = 1155
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = -2
Query: 329 ALDEISSIDLLADVVMSSIDFFVCDNNSSVLLQAELASSLISVSNFPITHSIACLPLPAF 150
ALD S + AD +M +I+ CD + VL QA + S + S+ +PL
Sbjct: 393 ALDFYSELCSHADQIMETIEKHFCDEETKVLPQARMLFSPEKQRQL-LYKSLCVMPLKLL 451
Query: 149 REIL 138
+L
Sbjct: 452 ERVL 455
>09_06_0032 +
20353789-20353963,20354240-20354340,20354426-20354560,
20354633-20354714,20354829-20354896,20354984-20355073,
20355133-20355257,20355384-20355717,20355841-20355957,
20356058-20356485,20356564-20356813,20356944-20357194,
20357278-20357587
Length = 821
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +1
Query: 187 IGKFDTEIKELASSACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDIEKL 360
I + + E+K AS++C S E+L + + I ++ + M+ +S LD+ K+
Sbjct: 339 IARLENELKFPASASCTSHAEILREKDELIKNLEEQLKELMEQ-KDTVQSQLDNFRKV 395
>11_06_0123 +
20334350-20334553,20335059-20335490,20336052-20336191,
20336281-20336401,20337110-20337250,20337421-20337663
Length = 426
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 202 TEIKELASSACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLD 345
TE KE +STD+ K IDD+ + + D + +TLD
Sbjct: 172 TEPKEPTDKPTESTDKPKGSNDKPIDDLIDEDLKELGDRKKRLFATLD 219
>11_06_0050 + 19631164-19631987,19632103-19634023
Length = 914
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 187 IGKFDTEIKELASSACKSTDELLSQTKKSIDDITTSARRSMDDISSK 327
+G + L S+ K+ EL+ TKK DD+ + DD+ SK
Sbjct: 144 VGHQTVDSLRLQSALYKNVSELVG-TKKKTDDLVSRLMEMHDDVESK 189
>07_01_0276 +
2028983-2029070,2030084-2030151,2030317-2031246,
2031334-2031415,2031544-2031609,2032606-2033304,
2033422-2035424,2035599-2036173,2037060-2037223,
2037306-2037365,2037475-2037839
Length = 1699
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 221 QVQPVKVQMNYYHKQRSQLMTSQHQQEDQWMISHLKQKAHLM 346
Q Q ++ QM KQR QL+ + QQ+ Q ++ Q+ HL+
Sbjct: 881 QQQQMQQQMQQQQKQRLQLLQLEQQQQQQLLL----QQQHLL 918
>02_01_0265 -
1754861-1755063,1755186-1755360,1755558-1755653,
1756110-1756256,1756343-1756511,1756661-1756812,
1756898-1756968,1757064-1757247,1757332-1757523,
1757664-1757771
Length = 498
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/54 (27%), Positives = 32/54 (59%)
Frame = +1
Query: 205 EIKELASSACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDIEKLTK 366
E++ + SSA T L +++K + S++RS+D++++ K+ +D I T+
Sbjct: 122 ELEAIISSADSKTLPLEAESK---EQELKSSKRSLDELTAMLKANVDAINNFTR 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,447,892
Number of Sequences: 37544
Number of extensions: 326343
Number of successful extensions: 894
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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