Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3l12
         (350 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167...    27   5.5  
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172...    27   5.5  
03_03_0253 + 15871870-15871949,15872101-15872170,15872666-158727...    26   7.2  

>12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,
            1676103-1676206,1676321-1676479,1676768-1676894,
            1677569-1677736,1677890-1678000,1678090-1678243,
            1678409-1678744,1678854-1679038,1679141-1679239,
            1679376-1679639,1679776-1679952,1680351-1680644,
            1680753-1680920,1681574-1681918,1682002-1682171,
            1682272-1682422,1683296-1683365,1683456-1683640,
            1683999-1684092,1684195-1684313,1684658-1684717,
            1684844-1684930,1685631-1685717,1685905-1686013,
            1686105-1686183,1686350-1686437,1686611-1686675,
            1687570-1687722,1688514-1688620,1688702-1688784,
            1688926-1689016,1689095-1689231,1689612-1689701,
            1689795-1689962,1690366-1690560
          Length = 1809

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 344  FSFLAKMNLFYKS*RYWNIIFYFWYLIRNNWNIFKTFNSS 225
            FS L ++   +K   ++NI+F   Y + N   I KT NSS
Sbjct: 1558 FSCLQQVITAFKDPGFFNIVFPMLYEVSNRSVICKTRNSS 1597


>11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,
            1721996-1722099,1722214-1722372,1722668-1722794,
            1723469-1723636,1723789-1723899,1723989-1724142,
            1724308-1724643,1724753-1724937,1725040-1725138,
            1725275-1725538,1725674-1725850,1726249-1726542,
            1726649-1726816,1727473-1727817,1727901-1728070,
            1728171-1728321,1729193-1729262,1729353-1729537,
            1729896-1729989,1730094-1730212,1730558-1730617,
            1730744-1730830,1732348-1732434,1732622-1732730,
            1732822-1732900,1733067-1733154,1733328-1733392,
            1734287-1734439,1735231-1735337,1735419-1735501,
            1735643-1735733,1735812-1735948,1736118-1736207,
            1736301-1736468,1736875-1737057
          Length = 1805

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 344  FSFLAKMNLFYKS*RYWNIIFYFWYLIRNNWNIFKTFNSS 225
            FS L ++   +K   ++NI+F   Y + N   I KT NSS
Sbjct: 1554 FSCLQQVITAFKDPGFFNIVFPMLYEVSNRSVICKTRNSS 1593


>03_03_0253 +
           15871870-15871949,15872101-15872170,15872666-15872701,
           15873576-15873630,15873859-15873941,15874019-15874850,
           15875184-15875286,15875359-15875498,15875649-15875880,
           15876203-15876338,15877208-15877302,15877381-15877504,
           15877690-15877812
          Length = 702

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 48  FIRGNAISGAPSIRGTNQFPNPP 116
           F+RG+ I  AP ++G   F +PP
Sbjct: 576 FVRGDFIHVAPRLKGETVFMSPP 598


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,493,160
Number of Sequences: 37544
Number of extensions: 83117
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)