Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3l09
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     27   3.4  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   4.5  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   6.0  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    26   6.0  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   7.9  
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    25   7.9  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    25   7.9  

>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 576 QLDPDTGRGLDNFRKAQRQVRESKKIFDKLTLDVLQK 686
           Q+DP +    D +R++ ++++ESK+   +  LD  +K
Sbjct: 269 QIDPHSSSLADEYRESNKRLQESKESCARFILDCDRK 305


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
 Frame = +3

Query: 270 VLDQYQERICILAQEENALGKFLRDSGKNADASGKHMISAGK--AISYCGQQRLSIRSPL 443
           V+ + ++ I ILA  E      L D+  ++ +S +H+IS           +Q  S     
Sbjct: 669 VVSKNKDNIAILADREARPQLLLDDNNDSSSSSSEHLISFNNHTGNKILSRQTTSSSIDS 728

Query: 444 LRLYHEVETFRGRAVSDMRATVSAMEKARLEYRAALS 554
             +   +E  +G   +  R+T       RL+   + S
Sbjct: 729 NNVQSNIEFLKGLNATHARSTSQVSHTQRLQQSISTS 765


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/57 (19%), Positives = 29/57 (50%)
 Frame = +3

Query: 489  SDMRATVSAMEKARLEYRAALSWMKSTSAQLDPDTGRGLDNFRKAQRQVRESKKIFD 659
            +D+ +   ++EK+ +EY + +  +      L  D  + LDN +  + +++E   + +
Sbjct: 833  NDLHSLQKSLEKSGIEYSSRIKTLMLEKQSLSEDNRKLLDNQQMMEIKLQELNGVIE 889


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 636 VLDVVPFGNYRGHDLYQGLAEHLSISSNSMLHDTLISPSPWQ 511
           V  + PFG   G     G  + +S   +++LHDT +   PW+
Sbjct: 526 VTSLHPFGMLVGE---LGSMDSMSAQVSALLHDTGVHSEPWE 564


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +3

Query: 288  ERICILAQEENALGKFLRDSGKNADASGKHMISAGKAISYCGQQRLSIRSPLLRL 452
            + ICI+A +     K   +SG    A    +I     ++   QQ LS  +P L++
Sbjct: 1392 QTICIVASDHYNRQKLFEESGSPKFAHVPSLIVCPSTLAGHWQQELSTYAPFLKV 1446


>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 292 EYVFWLKKKMLWGNFSEI 345
           EY  W++K+  WG + E+
Sbjct: 188 EYASWIRKETSWGGYIEL 205


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 544 ARYSNLAFSMADTVARISLTARPRNVSTS 458
           A+YS+     A +   IS+ +RP N+STS
Sbjct: 127 AKYSHPGAPTATSADSISMESRPSNLSTS 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,503,735
Number of Sequences: 5004
Number of extensions: 46197
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)