Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3l09
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818...    30   2.0  
03_05_0196 + 21849370-21850278,21850424-21851050                       28   6.2  
03_01_0281 + 2160480-2162003                                           28   8.2  

>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
            26481936-26482081,26482185-26482341,26482489-26482547,
            26482787-26482946,26483020-26483169,26483279-26483415,
            26483518-26483664,26483733-26483834,26483917-26483974,
            26484084-26484185,26484322-26484379,26484717-26484775,
            26486488-26486525,26486688-26486814,26486900-26487067,
            26487879-26488010,26488089-26488198,26488273-26488333,
            26488761-26488938,26489041-26489246,26489431-26489550,
            26489631-26489729,26489968-26490156,26490291-26490430,
            26491149-26491316,26491438-26491605,26491764-26491931,
            26492250-26492417,26492533-26492700,26492853-26493020,
            26493118-26493285,26493471-26493638,26493756-26493920,
            26494679-26494850,26495012-26495175,26495296-26495405,
            26495481-26495596,26495686-26495766,26495849-26496034,
            26496203-26496547,26496637-26496777,26496869-26496916,
            26497162-26497242,26497350-26497406,26497495-26497575,
            26497675-26497757,26497842-26497968
          Length = 2159

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +3

Query: 225  ELFRSISDSCLQLQRVLDQYQERICILAQEENALGKFLRDS-GKNAD 362
            ELF+ +SDS  + Q++ D  Q+    L QE +A+ K L +S G+N D
Sbjct: 1598 ELFKKVSDSEYRAQQLQDTVQK----LRQESDAVRKALAESHGRNED 1640


>03_05_0196 + 21849370-21850278,21850424-21851050
          Length = 511

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +3

Query: 615 RKAQRQVRESKKIFDKLTLDVLQKIDLL 698
           RKAQ +VRE+ K  DKLT D + K+  L
Sbjct: 332 RKAQSEVRETFKGQDKLTEDDVAKLSYL 359


>03_01_0281 + 2160480-2162003
          Length = 507

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = +3

Query: 309 QEENALGKFLRDSGKNADASGKHMISAGKAISYCGQQRLSIRSPLLRLYHEVETFRGRAV 488
           +EENA   FLRD+  N  ++G+   ++  A+S+           + ++  E+++  G   
Sbjct: 285 EEENASSSFLRDTTMNLISAGRD--ASAMALSWFFYLLTKNPCVVSKILEELDSVNGITT 342

Query: 489 SDMRATVSAMEKARLEY-RAALS 554
            D   T    E   L Y  AALS
Sbjct: 343 PDGMVTFDPDELRPLVYLHAALS 365


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,273,591
Number of Sequences: 37544
Number of extensions: 277686
Number of successful extensions: 698
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)