Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3l07
(745 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr... 302 4e-83
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 28 1.2
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 28 1.6
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 27 2.1
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 27 2.8
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 27 3.7
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces... 27 3.7
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 26 4.9
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 26 4.9
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 26 6.5
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 26 6.5
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 26 6.5
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 6.5
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 6.5
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 25 8.6
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 25 8.6
>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 322
Score = 302 bits (741), Expect = 4e-83
Identities = 150/237 (63%), Positives = 181/237 (76%), Gaps = 1/237 (0%)
Frame = +2
Query: 38 MSALDQLKQHSTVV-ADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGK 214
MS+L+QLK TVV +DTGDFE++ +YKP DATTNPSLIL+A+ QY ++D A+ Y K
Sbjct: 1 MSSLEQLKATGTVVVSDTGDFESIAKYKPQDATTNPSLILAASKKPQYAALVDAAVDYAK 60
Query: 215 DNGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFA 394
G SI Q+ D L + FG +IL I+PGRVS EVDAR SFD +I KA I L+
Sbjct: 61 AKGGSINSQIEIAFDRLLIEFGTKILAIVPGRVSTEVDARYSFDTQTTIEKARHLIKLYE 120
Query: 395 EHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSLYQAIACAEANVTLISPFV 574
GI +ER+LIK+AST+EGIQAAK+LE++ GIHCNLTLLFS QA+ACAEANVTLISPFV
Sbjct: 121 AEGIGRERVLIKIASTYEGIQAAKQLEEE-GIHCNLTLLFSFVQAVACAEANVTLISPFV 179
Query: 575 GRILDWYVEHTKKTYEGKEDPGVVSVTKIYNYYKKFGYKTQVMGASFRNTGEIRELA 745
GRILD+Y + Y +EDPGVVSV+ I+NYYKKFGYKT VMGASFRN GEI+ELA
Sbjct: 180 GRILDFYKAKNNRDYTAQEDPGVVSVSNIFNYYKKFGYKTIVMGASFRNVGEIKELA 236
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = -2
Query: 405 IPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHPKSTLSISKVSATCSSME 226
+P S NK+ + F + +N S+ ++ I N S P +S + +SAT S+E
Sbjct: 150 VPRSLNKIHDPSRF--IKDNDVENRIHVSSASKVASISNTSKPNPIVSENPISATSVSIE 207
Query: 225 LPL 217
+P+
Sbjct: 208 IPI 210
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.9 bits (59), Expect = 1.6
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +2
Query: 425 IKLASTWEGIQAAKELEK-KHGIHCNLTLLFSLYQAIACAEANVTLISPFVGRILDWYVE 601
+K+AS E I+ A+ K K+ I+ + L Q + E N S + R+L+ Y++
Sbjct: 131 LKIASDVEEIEIAQLYRKNKYRINFTRSTFDLLVQFLFENEVNG---SGIIIRLLNQYID 187
Query: 602 H--TKKTYEGKEDPGVVSV 652
T EGKEDP V +V
Sbjct: 188 IKITMPQVEGKEDPNVQAV 206
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/42 (28%), Positives = 28/42 (66%)
Frame = +3
Query: 372 LNLSIYLLNMVLKKKEF*LNWPPLGKEFKQPKSWRRSMESIV 497
L+ SI + + ++ +F L+ P+ ++FK +S+RR ++S++
Sbjct: 362 LDTSISQIRVTHEQAKFLLSVIPVNQDFKALQSYRRILDSVI 403
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -2
Query: 414 SFLIPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHPKSTLS 262
S LIP +K +A +SL ++NLA+ + T IF+++ PK S
Sbjct: 159 SILIPTFVSKFNEFLALD--SSLRDNNLATVAVITTDKAIFSLNVPKKKRS 207
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 482 HGIHCNLTLLFSLYQAIACAEANVTLISPFVGRILDWYVEHTKKTYEG 625
H + NL +LY C AN+ + +PF +++EH Y+G
Sbjct: 110 HELSHNLGFKKTLYNRAYCLFANLPVGAPFAASFRPYHMEH--HAYQG 155
>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 26.6 bits (56), Expect = 3.7
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +2
Query: 485 GIHCNLTLLFSLYQAIACAEANVTLISPFVGRILDWYVEHTKKTYEGKEDPGVV 646
GI C L FSL A+ +EA+V F+ IL E ++D GVV
Sbjct: 152 GIKCESILCFSLLTALLDSEADVIEFGDFLISIL----ESDGAVVNSEDDEGVV 201
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.9
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 71 TVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDNGSSIEEQVAE 250
T +AD + + + D T L+L + G+E Y D A N S+EE + +
Sbjct: 273 TTIADYKEVAIQNKIEDDDTWTAQELVLLSEGVEMYSD--DWAKVASHVNTKSVEECILK 330
Query: 251 TLDMLS 268
L++ S
Sbjct: 331 FLNLPS 336
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 386 LFAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNL 502
L +G K I++ + T + IQ L +KH IHC+L
Sbjct: 788 LIKSNGFKGLPIVVIKSITRQLIQCLTLLNEKHVIHCDL 826
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = -1
Query: 286 FTPKKHTQHIQSFSHLFFNGASIILSIFNS 197
FTPK + ++++ FNG+ + +S++N+
Sbjct: 166 FTPKGNPSAKETYNVYEFNGSGVAMSMYNT 195
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 602 HTKKTYEGKEDPGVVSVTKIYNYYKKFGYK 691
HT T EG+E+ G VS T + + ++ K
Sbjct: 301 HTGNTGEGREEEGPVSFTALRSTFRNMDLK 330
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 374 KFINLFAEHGIKKERI-LIKLASTWEGIQAA 463
+ ++LF+ HG++KE + L+ AS + IQ A
Sbjct: 216 RILSLFSFHGVRKESLELLWRASKYPNIQGA 246
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 480 FFSNSLAA*IPSQVEANLIKILSFLIPCSANKLI 379
FF+ SLA IP V + + + LIP A K++
Sbjct: 885 FFAQSLATPIPEPVPVDNMPTFTVLIPHYAEKIL 918
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 633 SSLPS*VFFVCSTYQSNIRPTNGDISVTFASAQAIAWYKENNSVR 499
SS+ S FVC +P S++ S + +K NNS+R
Sbjct: 868 SSINSKEAFVCLDRSKESKPIESCFSLSIQSVYMQSQFKYNNSIR 912
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 407 KKERILIKLASTWEGIQAAKEL 472
+K+ I + + WEG+Q AKEL
Sbjct: 299 EKKTITLHNGNQWEGLQMAKEL 320
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 300 IIFNISHPKSTLSISKVSATCSSMELPLSF 211
II N+ KS L+ KV A CS + LSF
Sbjct: 596 IIQNVEKLKSYLNSFKVQAECSEISKILSF 625
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,359,429
Number of Sequences: 5004
Number of extensions: 74507
Number of successful extensions: 249
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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