Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3l07
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312...   154   8e-38
01_07_0031 - 40603243-40603491,40603617-40603799,40603896-406040...    38   0.011
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047...    32   0.42 
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721...    31   0.97 
06_03_0743 + 24069752-24070483,24071890-24072345                       29   3.9  
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    28   6.8  
06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751...    28   9.0  

>08_01_0355 -
           3122374-3122520,3122912-3123047,3123124-3123221,
           3123724-3123801,3123876-3123945,3124452-3124516,
           3124606-3124686,3124822-3124926,3125002-3125085,
           3125175-3125250,3125358-3125436,3125526-3125646,
           3125768-3125827
          Length = 399

 Score =  154 bits (373), Expect = 8e-38
 Identities = 82/243 (33%), Positives = 142/243 (58%), Gaps = 8/243 (3%)
 Frame = +2

Query: 38  MSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGME--QYQHILDKAIKYG 211
           ++ LD +   S +V DT  F+  +++ PT AT + SL+L  AG+   +++  +D A+  G
Sbjct: 63  VTELDAVASFSEIVPDTVVFDDFEKFAPTAATVSSSLLLGIAGLPDTKFKSAIDTALADG 122

Query: 212 KDNG-SSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINL 388
           + N     E++++  L       G E+  ++PGRVS E+DARL++D    I +  + + L
Sbjct: 123 ECNTMEKPEDRMSCFLTKALANVGAEMAHLVPGRVSTEIDARLAYDTQGIIQRVHELLKL 182

Query: 389 FAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSLYQAIACAEANVTLISP 568
           +++H +  ER+L K+ +TW+GI+A++ LE + GI  +LT ++S  QA A A+A  +++  
Sbjct: 183 YSDHDVLSERLLFKIPATWQGIEASRLLESE-GIQTHLTFVYSFAQAAAAAQAGASVVQI 241

Query: 569 FVGRILDWYVEHT-----KKTYEGKEDPGVVSVTKIYNYYKKFGYKTQVMGASFRNTGEI 733
           FVGR+ DW   H+      +  +  ED G+    K+Y Y  K GYKT++M A+ RN  ++
Sbjct: 242 FVGRVRDWARTHSGDPEIDEALKKGEDAGLALAKKVYAYIHKNGYKTKLMAAAIRNKQDV 301

Query: 734 REL 742
             L
Sbjct: 302 FSL 304


>01_07_0031 -
           40603243-40603491,40603617-40603799,40603896-40604084,
           40604244-40604916,40605583-40605737
          Length = 482

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
 Frame = +2

Query: 176 YQHILDKAIKYGKDNGSSIEEQVAETLDMLSVLFG--CEILKIIPGRVSVEVDARLSFDK 349
           Y     + I  GKD  S+  E V + +     LF    +      G VSVEV  RL+ D 
Sbjct: 171 YDDQFKQLILAGKDAESAYWELVIKDIQDACKLFEPIYDQTDGADGYVSVEVSPRLANDT 230

Query: 350 DASIAKAIKFINLFAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSL--Y 523
             ++ +A K+++   +    +  + IK+ +T E + + KE+   +GI  N+TL+FS+  Y
Sbjct: 231 QGTV-EAAKWLHKVVD----RPNVYIKIPATAECVPSIKEVIA-NGISVNVTLIFSIARY 284

Query: 524 QAI 532
           +A+
Sbjct: 285 EAV 287


>12_02_0228 + 15903452-15903812,15904153-15904202,15904615-15904713,
            15907146-15907415,15908045-15908125,15909033-15909599,
            15909677-15910053,15910326-15911613
          Length = 1030

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 10/159 (6%)
 Frame = -2

Query: 654  VTETTPGSSLPS*VFFVCSTYQSNIRPTNGDISVTF---ASAQAIAWYKENNSVRLQWIP 484
            V+    GSS PS + F  +T QS+   T+G +   F   +S+++    ++ +       P
Sbjct: 724  VSSLAGGSSSPSSMIFAGATSQSSSITTSGSVPFQFSSQSSSESSLAGQDKSKAASSSAP 783

Query: 483  CFFSNSLAA*IP--SQVEANLIKILSFLIPCSANKLINLIAFAMLASLSNDNLAST---S 319
              FS    +  P   Q ++N +   S L+  S ++  N  + +   S SN NL S+   +
Sbjct: 784  FSFSPQFGSTSPFAGQGKSNSVSSQSTLL--SGSQFSN--SLSAQTSTSNSNLLSSEKVN 839

Query: 318  TDTRPGIIFNISHPKST--LSISKVSATCSSMELPLSFP 208
              + P   F  S P S+   S++  S T S+     S P
Sbjct: 840  PGSSPSFAFGSSAPGSSPVFSLAVGSGTTSATPASASSP 878


>12_02_0134 - 14071190-14071435,14071800-14071988,14072114-14072194,
            14072261-14072404,14072528-14072761,14072836-14073981,
            14074863-14074922,14075178-14075420,14075509-14075607,
            14076196-14076367,14076597-14076735,14077514-14077624,
            14077695-14077797,14077885-14077962,14078054-14078122,
            14078203-14078275,14078891-14078975,14079473-14079536,
            14079963-14080073,14080139-14080213,14080306-14080398,
            14080982-14081056,14081172-14081261
          Length = 1259

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -2

Query: 390  NKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHP 277
            N +++++AF  +A  S+ N+ STS     G + +I+ P
Sbjct: 897  NSVVDILAFPFVAVQSSPNMPSTSASINSGFLLSIASP 934


>06_03_0743 + 24069752-24070483,24071890-24072345
          Length = 395

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +1

Query: 382 QFIC*TWY*KRKNFN*IGLHLGRNSSSQRVGEEAWNPL*SYTVVLFVPSYCLC*SKCYTN 561
           QF C   Y     +N + +H+  + S  R G E+       T +L +P YC C + C  N
Sbjct: 227 QFSCPVCYKTFNRYNNMQMHMWGHGSQYRKGPESLRGT-QPTAMLRLPCYC-CAAGCRNN 284

Query: 562 I 564
           I
Sbjct: 285 I 285


>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
            21204453-21205031,21205176-21205484,21205638-21205718,
            21205971-21206279,21207430-21207816,21207964-21208767,
            21208856-21209218,21209437-21209667,21209934-21210278,
            21210494-21210712,21210759-21210815,21210978-21211322,
            21211538-21211756,21211803-21211859,21212022-21212366,
            21212584-21212814,21213100-21213458
          Length = 4322

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 22/87 (25%), Positives = 37/87 (42%)
 Frame = +2

Query: 8    SGEPDTKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHI 187
            S EP  ++T + A DQ K   T+V   G   A    K     T  +L  +   M    ++
Sbjct: 3142 SAEPTKRKTVVGASDQAKASETIVDREGMMTAPYREKSLCPDTQHAL-RNVLEMSPSDNL 3200

Query: 188  LDKAIKYGKDNGSSIEEQVAETLDMLS 268
             D     G+++GS  E    ++ D ++
Sbjct: 3201 TDNPFA-GQEHGSFSEGSTTDSRDAIT 3226


>06_03_0635 -
           22971502-22973840,22974112-22974403,22974639-22975162,
           22975314-22975583,22976393-22977124,22977226-22977310
          Length = 1413

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 509 LFSLYQAIACAEANVTLISPFVGRILDWYVEHTKKTYEGKE 631
           ++ L  A A  EA +   S     ILDW V H+ K Y  +E
Sbjct: 727 IYDLENAKAAEEAKLLNKSHLHKLILDWNVNHSTKDYSQEE 767


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,508,799
Number of Sequences: 37544
Number of extensions: 428794
Number of successful extensions: 1082
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)