Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3l04
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0607 - 12088810-12089105,12089200-12090208                       31   0.92 
10_08_0488 + 18258178-18258228,18258864-18258926,18259006-182591...    29   4.9  

>02_02_0607 - 12088810-12089105,12089200-12090208
          Length = 434

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 545 MA*SW-QGDEVSSRHGSTSPHHRHVLDHGSPY 453
           M+ SW      SS   ST  HHRHV+ H S Y
Sbjct: 1   MSSSWFHSSSSSSSSSSTHHHHRHVVHHASTY 32


>10_08_0488 +
           18258178-18258228,18258864-18258926,18259006-18259143,
           18259355-18259462,18259691-18259777,18259911-18259961,
           18260058-18260129,18260323-18260442,18260695-18260742,
           18261060-18261239,18261365-18261454,18261619-18261951
          Length = 446

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -1

Query: 536 SWQGDE-VSSRHGSTSPHHRHVLDHGSPY 453
           +++G+E V   HGST PH RHV+  GS Y
Sbjct: 334 TYEGEEFVKLLHGSTVPHTRHVV--GSNY 360


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,832,161
Number of Sequences: 37544
Number of extensions: 246238
Number of successful extensions: 528
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)