Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3k23
(379 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 29 0.24
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 29 0.24
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 1.3
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 25 3.0
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 25 3.0
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 25 3.9
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa... 25 5.2
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|... 25 5.2
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17... 24 9.1
SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar... 24 9.1
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 9.1
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 29.1 bits (62), Expect = 0.24
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = +2
Query: 137 EDYNPNG-NGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 244
+DYN N N Y PI N Y+++ G PYF PG
Sbjct: 118 DDYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 29.1 bits (62), Expect = 0.24
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 280 NFLRYSLLPTASTRERGRLEVRSALGRVHVICTVVD 173
NF ++P STR+R + +R G +H+IC D
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGAD 791
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 1.3
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +1
Query: 166 RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 273
R + ++C R P RP + PW + + K I+
Sbjct: 1280 RDFIEQCFERDPEQRPRAVDLLTHPWITDFRKKTII 1315
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 25.4 bits (53), Expect = 3.0
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 93 PTLKTQLR*WKTLTQKITTLMETATNLSTTVHITWTLPK 209
PT K L + LT+ + + E + L + WT+PK
Sbjct: 89 PTTKCALNCMRLLTRLMPIIFEDKSMLEWFDYFAWTVPK 127
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 25.4 bits (53), Expect = 3.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 131 DSEDYNPNGNGYEPIDNGAYYVDPPQGRP 217
D + Y +G G +P + G YY + P+G+P
Sbjct: 477 DMKIYCVHGVG-KPTERGYYYTNNPEGQP 504
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.0 bits (52), Expect = 3.9
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -2
Query: 378 FFFKHYNMFIYLFR*HKFI*NFEI 307
FF K Y+ F+++FR + FI +FE+
Sbjct: 188 FFLKQYHNFMFVFRDY-FIRDFEL 210
>SPCC1753.03c |rec7||meiotic recombination protein Rec7
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 339
Score = 24.6 bits (51), Expect = 5.2
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +3
Query: 129 LTQKITTLMETATNLSTTVHITWTLPKADLTSSLP 233
+TQ TT + +TN + +P A++ S+ P
Sbjct: 169 MTQTATTAVNNSTNYVNPAPLQHVMPNAEIFSNTP 203
>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 521
Score = 24.6 bits (51), Expect = 5.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 375 FFKHYNMFIYLFR*HKFI*NFEIYC*YIISLL 280
FF YN FI+ F+ FI ++ Y+I +L
Sbjct: 470 FFNGYNAFIHGFKYRSFITSYIGIAAYVIMIL 501
>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 268
Score = 23.8 bits (49), Expect = 9.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 166 RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 273
+T+ R L P L Y + WC+ E+KN L
Sbjct: 217 KTFLLRARLLNGLDVPNLQNVYDWVWCTYDELKNKL 252
>SPAC2F7.05c |||translation initiation factor eIF5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 23.8 bits (49), Expect = 9.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -1
Query: 118 YLNWVLSVGHSQQSEDENHEE 56
+L W+ +SEDE EE
Sbjct: 370 FLTWLAEASDESESEDEEEEE 390
>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 117
Score = 23.8 bits (49), Expect = 9.1
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +3
Query: 84 WLWPTLKTQLR*WK 125
WLWPT Q WK
Sbjct: 40 WLWPTYDAQTIPWK 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,536,388
Number of Sequences: 5004
Number of extensions: 31046
Number of successful extensions: 79
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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