Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3k23
(379 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0382 - 22501041-22501279,22501717-22501810 31 0.30
10_08_0216 - 15942379-15942852,15942956-15943033 30 0.53
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 29 1.6
08_02_1289 - 25923916-25924586,25925148-25926630 27 3.7
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 27 3.7
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 27 6.5
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 27 6.5
12_01_0239 - 1793612-1793716,1793808-1793826,1794424-1794599,179... 26 8.6
11_03_0182 + 11307275-11307368,11307485-11307594,11307654-113078... 26 8.6
02_04_0407 + 22645775-22645865,22645998-22646269 26 8.6
01_06_0390 - 28938485-28938751,28939924-28941282 26 8.6
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 31.1 bits (67), Expect = 0.30
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Frame = +2
Query: 53 KFFMIFVLALLA--MANAQ----DPVKVVENADSEDYNPNGNGYEPIDNGAYY------- 193
K ++F L L A +A+A+ D E+ D ED P+ Y+P + YY
Sbjct: 11 KALLVFALLLAAAFVASAEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPD 70
Query: 194 -VDPPQGRPYFKPTPFPGARGG 256
DPP Y+ P P P GG
Sbjct: 71 YYDPPPSPDYYDPPPSPYYGGG 92
>10_08_0216 - 15942379-15942852,15942956-15943033
Length = 183
Score = 30.3 bits (65), Expect = 0.53
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +2
Query: 47 KMKFFMIFVLALLAMANAQDPVKVVENADSEDYNPNGNGYEPIDNGAYYVD-PPQGRPYF 223
K+ FVL + ++NA+ + VV A++E G G G YY P PY+
Sbjct: 5 KLLAITFFVLLSIGVSNAR--MGVVVGAEAEAVEAGGGGGGGGGGGGYYGPYGPYYGPYY 62
Query: 224 KPTPFPGARGG 256
P P A GG
Sbjct: 63 GPYYGPYASGG 73
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 28.7 bits (61), Expect = 1.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 149 PNGNGYEPIDNGAYYVDPPQGRPYFKP 229
P G Y P G Y PP+G+P + P
Sbjct: 281 PQGQPYPPQPYGQTYPPPPKGQPTYPP 307
>08_02_1289 - 25923916-25924586,25925148-25926630
Length = 717
Score = 27.5 bits (58), Expect = 3.7
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -1
Query: 367 ALQYVYLFIPLT*I---HMKF*NILLIHYFVINFLRYSLLPTASTRERGRLEV 218
ALQY+Y +P+ + H+K NILL F YSL+P + +L V
Sbjct: 519 ALQYLYDELPMLTVPHGHLKSSNILLNDRFEPLLTDYSLVPVMNQSHSAQLMV 571
>03_05_0937 -
28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +1
Query: 181 RCILRGPSPR-PTLLQAYPFPWCSRW 255
+ I+ PSP P + A F WCS W
Sbjct: 755 KAIIHNPSPLIPPIFGADEFGWCSEW 780
>08_01_0461 -
4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 154 WKRLRTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 273
W RLR R +L+ P+P P + + RW K +L
Sbjct: 836 WDRLRENSFRILLQFPTPLPGISSSTSIDSVIRWAKKLVL 875
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 107 PVKVVENADSEDYNPNGNGYEPIDNGAYYVDPPQGRPY 220
PVK + D +D +G + D ++ PQ RPY
Sbjct: 656 PVKEDHSDDPDDMPSSGGDFTTSDIEGSFIFKPQARPY 693
>12_01_0239 -
1793612-1793716,1793808-1793826,1794424-1794599,
1794701-1794747,1795760-1796291
Length = 292
Score = 26.2 bits (55), Expect = 8.6
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Frame = +2
Query: 98 AQDPVKVVENADSEDYNPNGNGY------EPIDNGAYYVDPPQGRPYFKPTPFP 241
A+ P + ++ S Y G GY +P +G Y PP +PY P P
Sbjct: 40 AKPPKEGKTSSSSAPYYGGGGGYGAPPSTQPYGSGGGYGAPPSSQPYGAPYGAP 93
>11_03_0182 +
11307275-11307368,11307485-11307594,11307654-11307856,
11307879-11307964,11308861-11308934,11308936-11309078,
11309485-11309594,11309645-11309787
Length = 320
Score = 26.2 bits (55), Expect = 8.6
Identities = 20/69 (28%), Positives = 28/69 (40%)
Frame = +2
Query: 65 IFVLALLAMANAQDPVKVVENADSEDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPG 244
IFVLA ++ A + E+ D++ N P G G P P P
Sbjct: 49 IFVLAFSLISRASHENVLKEHEDTDHRYCTKNFTFPFSGGDVGSGGGVGAGAGVPPPSPS 108
Query: 245 ARGGK*RIS 271
ARGG R++
Sbjct: 109 ARGGVGRVA 117
>02_04_0407 + 22645775-22645865,22645998-22646269
Length = 120
Score = 26.2 bits (55), Expect = 8.6
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Frame = +2
Query: 68 FVLALLAMANAQDPVKVVENADSEDYNPNGNGYEPIDNGAYYVDPPQGRP-YFKPTPFPG 244
F++A A Q K D +DY G GY P G Y G P +PG
Sbjct: 20 FLVAASAADETQANKKEDTKVDVQDYWRGGGGYPPRGGGYGYPGRGYGYPGRGGGGGYPG 79
Query: 245 ARGG 256
GG
Sbjct: 80 GGGG 83
>01_06_0390 - 28938485-28938751,28939924-28941282
Length = 541
Score = 26.2 bits (55), Expect = 8.6
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 166 RTYRQRCILRGPSPRPTLLQAYPFPW 243
+ + RC R PS RPT Q P+
Sbjct: 234 KNFLSRCFTRNPSDRPTAAQLLEHPF 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,680,498
Number of Sequences: 37544
Number of extensions: 208985
Number of successful extensions: 587
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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