Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3k23
         (379 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed ...    31   0.36 
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z75711-1|CAB00032.1|  196|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z77136-2|CAB00884.3|  670|Caenorhabditis elegans Hypothetical pr...    26   7.8  

>AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed
           with polycystins protein4 protein.
          Length = 402

 Score = 30.7 bits (66), Expect = 0.36
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +3

Query: 78  LCWLWPTLKTQLR*WKTLTQKITTLMETATNLSTTVHITWTLPKADLTSSLPLS 239
           LC+LW  L T      T T   + +  T T +      T T+P  + T+++PL+
Sbjct: 179 LCYLWVPLTTTTTTTTTTTTTTSPMNTTTTTVLINGTTTTTVPTNETTTTVPLN 232


>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical protein
            C27B7.4 protein.
          Length = 1274

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 158  NGYEPIDNGAYYVDPPQGRPYFKPTPFPGA 247
            NGY   +NG    +P Q  P   P+ FPGA
Sbjct: 1146 NGYPNNNNGGAIGNPQQMLPPRDPSAFPGA 1175


>Z75711-1|CAB00032.1|  196|Caenorhabditis elegans Hypothetical
           protein K02B12.2 protein.
          Length = 196

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 144 TTLMETATNLSTTVHITWTLPKAD 215
           TT +++ T+LS   + TW LPK D
Sbjct: 24  TTHVKSTTDLSKCGNCTWVLPKLD 47


>Z77136-2|CAB00884.3|  670|Caenorhabditis elegans Hypothetical
           protein ZC376.2 protein.
          Length = 670

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
 Frame = +2

Query: 56  FFMIFVLALLAMANAQDPVKV----VENAD-SEDYNPNGNGYEPIDNGAYYVDPPQGRPY 220
           FF  F+L  +        VK+    +E    +  Y+P GN    +  G  YV+PP G   
Sbjct: 2   FFRFFILWAILQNVRSTKVKLSTGTIEGRTLTASYSPLGNQTGIVFFGVPYVEPPVGNLR 61

Query: 221 F-KPTP 235
           F KP P
Sbjct: 62  FRKPRP 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,429,918
Number of Sequences: 27780
Number of extensions: 178498
Number of successful extensions: 484
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)