Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3k21
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 29 0.66
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 27 2.0
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 27 2.0
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 27 2.7
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo... 27 3.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.7
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 26 4.7
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.7
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 26 6.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.2
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 29.1 bits (62), Expect = 0.66
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 229 DTVVTGLRGSKINSYKINLDKGKATIDFTANVTLKAHYVMDGQVLILPIRG 381
DT+V L G+ Y I+L +G+ T++ +N+ DG + I+ +RG
Sbjct: 573 DTLV--LEGTLHAQYYIDLKRGRVTLNQMSNIGFVCIGYQDGGITIIDMRG 621
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 27.5 bits (58), Expect = 2.0
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Frame = +1
Query: 343 VMDGQVLILPIRGNGPAKIKITNLRIVVTYDFTTVAGHWVLTGYKDHYKMDRAQFKFNNL 522
++DG V + +G AK+ N+R + G W L G+ ++ A+++FN+
Sbjct: 157 IIDGLVFL-----HGSAKVIHYNIR--PSSVVVDAKGDWKLCGFSFSQSVESARYEFNDY 209
Query: 523 -FGGNKELAQTTEKFTNQNWEIIMQEIAPPALNQIISSCV 639
FG L Q+ + E I EIA P + C+
Sbjct: 210 DFGIPSSLQQSMDFLAP---EYITHEIAGPESDVFSFGCL 246
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +3
Query: 537 GASSNNRKIHQSKLGDYNARNSTTGAQPDHKQ----LRGESKTTFRSSS 671
G+S NN + S G+YN NS Q H+Q L+G + + SSS
Sbjct: 558 GSSGNNNNNNNSNSGNYNNNNSGNNNQ-QHQQSSSSLQGLASSFLNSSS 605
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = +3
Query: 24 PWFPAVLNF--LHQSVLSVRSKPQR 92
PWFP +LN L + VLS+ S P R
Sbjct: 254 PWFPNILNVFNLVKYVLSIHSVPSR 278
>SPBC2A9.06c |||di-trans,
poly-cis-decaprenylcistransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 22 HLGSPPF*TSFISPCSASDPNLNECIQKVIEVVAPKFA-DGIAEL--GIAPL 168
+LG +PCS + N N+C+ + ++A + D I +L G+A L
Sbjct: 124 YLGGDKCTVHVTNPCSPDEKNQNDCVDLKVHLIAKEDGRDAIIDLTRGLADL 175
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 248 RPVTTVSVNVIFSAGLLTSTVPSWTGSRGAIPSSAMPSANFGAT 117
+P + + + FS+ TST S+ S + SS+ PS++ +T
Sbjct: 186 QPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSST 229
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -2
Query: 239 TTVSVNVIFSAGLLTSTVPSWTGSRGAIPSSAMPSANFGATTSIT 105
+T S + + S+ LTS+ PS S +IPS + ++ +T+S T
Sbjct: 123 STTSSSSLVSSTTLTSSSPSAVSSTTSIPSISSTISSSVSTSSFT 167
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -2
Query: 245 PVTTVSVNVIFSAGLLTSTVPSWTGSRGAIPSSA 144
P ++ S + S+ +TST P+ + S GAI S+A
Sbjct: 212 PSSSKSSSKFSSSSFITSTTPASSSSSGAIVSNA 245
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 475 KDHYKMDRAQFKFNNLFGGNKELAQTTEKFTNQNW 579
K +K D+ QFK+N L L QT +N+N+
Sbjct: 210 KTFFKADKVQFKWNALGTSLLVLTQTEVDKSNKNY 244
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 230 SVNVIFSAGLLTSTVPSWTGSRGAIPSSAMPSANFGATTSIT 105
S + + S T +V S T PSS++ S++ +TTS++
Sbjct: 851 STSSVTSTAYTTDSVTSTTALTSQGPSSSVVSSSLSSTTSLS 892
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,195
Number of Sequences: 5004
Number of extensions: 56383
Number of successful extensions: 166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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