Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3k21
(717 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0781 + 11141469-11141486,11141855-11141978,11142024-111423... 30 1.6
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 30 1.6
06_01_0292 + 2136637-2137050,2137162-2137671 29 2.8
04_01_0526 - 6901003-6901056,6901070-6901404,6901423-6901607,690... 29 3.7
02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,10037... 29 4.9
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449... 28 6.4
01_06_0030 + 25756294-25756575,25756977-25757101,25757276-257573... 28 6.4
06_01_1173 + 10014391-10014678,10015478-10017245,10017333-100174... 28 8.5
05_04_0454 + 21383068-21384525 28 8.5
05_03_0591 + 15892772-15893412,15893478-15893910 28 8.5
05_03_0134 + 8790409-8790421,8790716-8791023,8791836-8792153,879... 28 8.5
02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410 28 8.5
01_05_0386 - 21683909-21685334,21685513-21685541 28 8.5
>03_02_0781 +
11141469-11141486,11141855-11141978,11142024-11142340,
11143219-11143509,11143751-11143956,11144048-11144327
Length = 411
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +1
Query: 142 IAELGIAPLDPVQLGTVEVNNPALKITFTDTVVTGLRGSKINSYKINLDKGKATIDFTAN 321
++ GI LG +V K TF +V + S + Y +NLD T+ F AN
Sbjct: 59 LSNFGIGSSGLKGLGLCDVGTG--KTTFMHRLVCHTQASNMRGYVLNLDPAVMTLPFGAN 116
Query: 322 VTLK 333
+ ++
Sbjct: 117 IDIR 120
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 187 TVEVNNPALKITFTDTVVTGLRGSKI-NSYKINLDKGKATIDFTANVTLKAHYVMDGQVL 363
T++ +L TD + G + NSY INL IDF++ VT A + DG ++
Sbjct: 69 TIKSTGISLYYEMTDAALRSFEGKRDGNSYLINLIDSPGHIDFSSEVT-AALRITDGALV 127
Query: 364 IL 369
++
Sbjct: 128 VV 129
>06_01_0292 + 2136637-2137050,2137162-2137671
Length = 307
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 594 RNSTTGA--QPDHKQLRGESKTTFRSSSRHRIITAVNGETV 710
R +T GA QP+H+Q +S TT SSS AV G V
Sbjct: 232 RVATAGAPHQPNHQQCHPKSNTTISSSSTAAAAVAVAGGNV 272
>04_01_0526 -
6901003-6901056,6901070-6901404,6901423-6901607,
6902201-6904641
Length = 1004
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 44 KLPSSVRAQRQIQTSTNAYKK**KWWLQSSLMAL 145
K+PSS +Q I TS+N +K+ K W+ S + L
Sbjct: 436 KVPSSNSSQSMISTSSNKWKRNRKHWVLGSSLIL 469
>02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,
1003716-1003805,1004034-1004111,1004513-1004518,
1004849-1004958,1005174-1005369
Length = 1058
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = -1
Query: 429 GDHDSQVSDFNLSRSVASDGQDQHLTVHNVMSLQGDIGREV 307
G+ + +FNL +VAS QD+ + +H+ M +GD GR V
Sbjct: 935 GEPEGLSFEFNLCEAVASWEQDELVKIHSPM--RGDPGRVV 973
>12_02_0858 + 23740589-23743233,23743362-23743503,23744778-23744990,
23745083-23745190,23745378-23745587,23745881-23746055,
23746197-23746264
Length = 1186
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 76 DPNLNECIQKVIEVVAPKFADGIAE 150
DPN N +QK IE V P+F E
Sbjct: 956 DPNANHVVQKCIEHVPPRFIQFFVE 980
>01_06_0030 +
25756294-25756575,25756977-25757101,25757276-25757313,
25757501-25757611,25757703-25757782,25758264-25758318,
25758465-25758851,25759080-25759223,25759630-25759671,
25759755-25759837
Length = 448
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 159 YSQLSNAISELWSHHFYHFLYAFV 88
+S S +I LW FYHFLY V
Sbjct: 370 FSLFSFSIYSLWFKGFYHFLYLLV 393
>06_01_1173 +
10014391-10014678,10015478-10017245,10017333-10017436,
10017632-10017706,10017887-10017918,10019396-10019482,
10020848-10021294,10021477-10021630,10022203-10022329,
10022547-10022632,10022719-10022790,10023083-10023286,
10023732-10024049
Length = 1253
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 495 PSSVQVQQPLRGKQGASSNNRKIHQS 572
PS++ Q+ L GK +SSNN K ++S
Sbjct: 479 PSTIMRQESLTGKVSSSSNNEKHNRS 504
>05_04_0454 + 21383068-21384525
Length = 485
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +3
Query: 438 HDSRGPLGADRLQGPLQNGPSSVQVQQPLRGKQGASSNNRKIHQSKLGDYNARNSTTGAQ 617
H R P QG LQ G S+ Q+ + +QG SS G+ + + A
Sbjct: 350 HGYRKPESYQGGQGQLQYGYSAPNRQRQQQQQQGYSSGRPSAGGQYAGEDSYGSRQIPAN 409
Query: 618 PDHKQLRGESK 650
H+ RG+ +
Sbjct: 410 QQHQHFRGQQR 420
>05_03_0591 + 15892772-15893412,15893478-15893910
Length = 357
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1
Query: 246 AGDHGVCKRDLQRRIVDL 193
A DHGV +R ++RR+VDL
Sbjct: 265 AADHGVTRRWVRRRVVDL 282
>05_03_0134 +
8790409-8790421,8790716-8791023,8791836-8792153,
8793021-8793212,8793383-8793618,8793696-8793953,
8794237-8794315,8797728-8797895
Length = 523
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 618 VERRWCYFLHYNLPILIGEFF 556
++R CYF+HY +G FF
Sbjct: 487 IQRDMCYFIHYECAHQLGRFF 507
>02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410
Length = 1044
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 373 IRGNGPAKIKITNLRIVVTYDFTTVAGHWV-LTGYKDHYKMDRAQFKFNNLFG 528
+RG P+ +T+L++V+ Y AG W L+ K+ + + F NNL G
Sbjct: 370 LRGVIPSFSLMTDLQVVMLYSNQLEAGDWAFLSSLKNCSNLLKLHFGENNLRG 422
>01_05_0386 - 21683909-21685334,21685513-21685541
Length = 484
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2
Query: 245 PVTTVSVNVIFSAGLLTSTVPSWTGSRGAIPSSAMP 138
P +S+N + + TS+ P++ S A+P+ A P
Sbjct: 435 PNAAMSINTAAATTMATSSSPTYNNSNAAMPAFAFP 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,433,508
Number of Sequences: 37544
Number of extensions: 418975
Number of successful extensions: 1231
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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