Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3k21
(717 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3 prot... 33 1.4
AF007194-1|AAC02272.1| 957|Homo sapiens mucin protein. 33 1.4
AB038784-1|BAB12118.1| 877|Homo sapiens intestinal mucin protein. 33 1.4
AB038782-1|BAB12116.1| 878|Homo sapiens intestinal mucin protein. 33 1.4
AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone recepto... 31 3.1
Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein. 30 9.5
BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subuni... 30 9.5
AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D receptor-inte... 30 9.5
AF229178-1|AAF69491.1| 753|Homo sapiens leucine rich repeat and... 30 9.5
>AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3
protein.
Length = 1217
Score = 32.7 bits (71), Expect = 1.4
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -2
Query: 245 PVTTVSVNVIFSAGLLTSTVPSWTGSRGAIPSSAMPSANFGATTSITFCMHSL 87
P+++ S +++ T T P T + G S A + FG+T S T +H+L
Sbjct: 456 PISSFSTSIVVIPETPTQTPPVLTSATGTQTSPAPTTVTFGSTDSSTSTLHTL 508
>AF007194-1|AAC02272.1| 957|Homo sapiens mucin protein.
Length = 957
Score = 32.7 bits (71), Expect = 1.4
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -2
Query: 245 PVTTVSVNVIFSAGLLTSTVPSWTGSRGAIPSSAMPSANFGATTSITFCMHSL 87
P+++ S +++ T T P T + G S A + FG+T S T +H+L
Sbjct: 456 PISSFSTSIVVIPETPTQTPPVLTSATGTQTSPAPTTVTFGSTDSSTSTLHTL 508
>AB038784-1|BAB12118.1| 877|Homo sapiens intestinal mucin protein.
Length = 877
Score = 32.7 bits (71), Expect = 1.4
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -2
Query: 245 PVTTVSVNVIFSAGLLTSTVPSWTGSRGAIPSSAMPSANFGATTSITFCMHSL 87
P+++ S +++ T T P T + G S A + FG+T S T +H+L
Sbjct: 116 PISSFSTSIVVIPETPTQTPPVLTSATGTQTSPAPTTVTFGSTDSSTSTLHTL 168
>AB038782-1|BAB12116.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 32.7 bits (71), Expect = 1.4
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -2
Query: 245 PVTTVSVNVIFSAGLLTSTVPSWTGSRGAIPSSAMPSANFGATTSITFCMHSL 87
P+++ S +++ T T P T + G S A + FG+T S T +H+L
Sbjct: 116 PISSFSTSIVVIPETPTQTPPVLTSATGTQTSPAPTTVTFGSTDSSTSTLHTL 168
>AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone
receptor-associated protein complex component TRAP220
protein.
Length = 1581
Score = 31.5 bits (68), Expect = 3.1
Identities = 24/84 (28%), Positives = 36/84 (42%)
Frame = +3
Query: 450 GPLGADRLQGPLQNGPSSVQVQQPLRGKQGASSNNRKIHQSKLGDYNARNSTTGAQPDHK 629
GP G D L G Q G S+ P+ K S + + K ++ ST+G+ D
Sbjct: 1318 GPGGEDPLDG--QMGVSTNSSSHPMSSKHNMSGGEFQGKREKSDKDKSKVSTSGSSVDSS 1375
Query: 630 QLRGESKTTFRSSSRHRIITAVNG 701
+ ESK +S II+ +G
Sbjct: 1376 KKTSESKNVGSTSVAKIIISKHDG 1399
>Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein.
Length = 1566
Score = 29.9 bits (64), Expect = 9.5
Identities = 23/84 (27%), Positives = 35/84 (41%)
Frame = +3
Query: 450 GPLGADRLQGPLQNGPSSVQVQQPLRGKQGASSNNRKIHQSKLGDYNARNSTTGAQPDHK 629
GP G D L G Q G S+ P+ K S + + K ++ ST+G+ D
Sbjct: 1303 GPGGEDPLDG--QMGVSTNSSSHPMSSKHNMSGGEFQGKREKSDKDKSKVSTSGSSVDSS 1360
Query: 630 QLRGESKTTFRSSSRHRIITAVNG 701
+ ESK + II+ +G
Sbjct: 1361 KKTSESKNVGSTGVAKIIISKHDG 1384
>BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subunit 1
protein.
Length = 1581
Score = 29.9 bits (64), Expect = 9.5
Identities = 23/84 (27%), Positives = 35/84 (41%)
Frame = +3
Query: 450 GPLGADRLQGPLQNGPSSVQVQQPLRGKQGASSNNRKIHQSKLGDYNARNSTTGAQPDHK 629
GP G D L G Q G S+ P+ K S + + K ++ ST+G+ D
Sbjct: 1318 GPGGEDPLDG--QMGVSTNSSSHPMSSKHNMSGGEFQGKREKSDKDKSKVSTSGSSVDSS 1375
Query: 630 QLRGESKTTFRSSSRHRIITAVNG 701
+ ESK + II+ +G
Sbjct: 1376 KKTSESKNVGSTGVAKIIISKHDG 1399
>AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D
receptor-interacting protein complex component DRIP205
protein.
Length = 1566
Score = 29.9 bits (64), Expect = 9.5
Identities = 23/84 (27%), Positives = 35/84 (41%)
Frame = +3
Query: 450 GPLGADRLQGPLQNGPSSVQVQQPLRGKQGASSNNRKIHQSKLGDYNARNSTTGAQPDHK 629
GP G D L G Q G S+ P+ K S + + K ++ ST+G+ D
Sbjct: 1303 GPGGEDPLDG--QMGVSTNSSSHPMSSKHNMSGGEFQGKREKSDKDKSKVSTSGSSVDSS 1360
Query: 630 QLRGESKTTFRSSSRHRIITAVNG 701
+ ESK + II+ +G
Sbjct: 1361 KKTSESKNVGSTGVAKIIISKHDG 1384
>AF229178-1|AAF69491.1| 753|Homo sapiens leucine rich repeat and
death domain containing protein protein.
Length = 753
Score = 29.9 bits (64), Expect = 9.5
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 91 ECIQKVIEVVAPKFADGIAELGIAPLDPVQLGT 189
E ++ V+E+ K+ D I +G+AP DPV G+
Sbjct: 710 EEVRAVLELGRRKYQDSIRRMGLAPKDPVLPGS 742
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,764,283
Number of Sequences: 237096
Number of extensions: 2214796
Number of successful extensions: 5104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5104
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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