Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3k20
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,473...    29   2.0  
07_03_1647 + 28370226-28370369,28370452-28370611,28370704-283708...    28   3.5  
12_01_0128 - 967720-968247,969327-969596                               28   4.6  
02_02_0140 + 7125914-7126264,7126426-7126677,7126766-7126861,712...    27   8.1  

>01_01_0628 -
           4731052-4731601,4731825-4732782,4733143-4733953,
           4734038-4734241,4734695-4734802,4735930-4736369,
           4736463-4736541
          Length = 1049

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +2

Query: 149 LCFGYMKLYSYNQETKNCEEFIYGGCQG-NDNRFSTLAECEQKCIN*LIIS 298
           LCF        N  T+      Y GCQG   N  ST+   E K ++ ++ S
Sbjct: 324 LCFLQQTRSHQNMITQEGSSLTYNGCQGITSNFLSTVENAEDKFVHKIVTS 374


>07_03_1647 + 28370226-28370369,28370452-28370611,28370704-28370831,
            28372512-28372628,28372729-28372782,28372985-28373075,
            28373517-28373688,28374452-28374573,28374726-28374817,
            28375331-28375373,28375596-28375656,28376367-28376515,
            28376659-28376729,28376805-28376975,28377056-28377124,
            28377427-28377528,28377629-28377697,28378060-28378138,
            28378238-28378337,28378438-28378513,28378715-28378894,
            28379430-28379552,28379634-28379717,28380068-28380252,
            28380339-28380477,28380585-28380644,28380926-28381030,
            28381332-28381445
          Length = 1019

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -3

Query: 111  SVVGSSLMTDVKHAAKKTPANRKSTDLNMTSLIQY 7
            S V S  M D KHA ++  A+  S   NMT LIQ+
Sbjct: 966  SDVRSLRMNDFKHAHEQVCASITSDSRNMTELIQW 1000


>12_01_0128 - 967720-968247,969327-969596
          Length = 265

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -3

Query: 153 QRPASPKACSHIGKSVVGSSLMTDVKHAAKKTPANRKSTDL 31
           +RP +P ACS  G SVV S    ++  + +K   NR S+ L
Sbjct: 227 RRPYTPMACSSSGNSVVHSG---EIIKSKEKYHLNRSSSSL 264


>02_02_0140 +
           7125914-7126264,7126426-7126677,7126766-7126861,
           7127013-7127187,7127283-7127363,7127451-7127548,
           7127828-7127920,7128607-7128678,7128998-7129117,
           7129210-7129260,7130026-7130211,7130355-7130411
          Length = 543

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 150 RPASPKACSHIGKSVVGSSLMTDVKHAAKKTPANRK 43
           RP SP +    G+ V  SSL    +H A  TP  R+
Sbjct: 42  RPPSPPSPLPGGRGVPHSSLAAASRHYASSTPGRRR 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,820,957
Number of Sequences: 37544
Number of extensions: 203770
Number of successful extensions: 434
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)