Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3k20
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   5.3  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   9.3  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   9.3  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 367 NSFYTKHHHFMHQGSRF-KERALIRN 293
           NS  ++ H F H  SR+ +ER+  R+
Sbjct: 215 NSLRSRTHDFQHTSSRYSRERSCSRD 240


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 161 YMKLYSYNQETKNCEEFIYGGCQGNDNRF 247
           Y  + S+N    N ++F  G  Q ND ++
Sbjct: 264 YSAMSSHNLNYVNTKQFTQGKFQANDIQY 292


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 191 SPGCTSIVSYSRNK 150
           +PGC   + Y RNK
Sbjct: 68  APGCVCRLGYLRNK 81


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 191 SPGCTSIVSYSRNK 150
           +PGC   + Y RNK
Sbjct: 68  APGCVCRLGYLRNK 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,115
Number of Sequences: 438
Number of extensions: 2398
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)