Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3k19
         (469 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0196 + 15331604-15331646,15332141-15332260,15334106-153342...    29   1.9  
11_04_0048 + 12792270-12792276,12793453-12793697,12793866-12794741     28   3.3  
05_07_0311 - 29139883-29140359,29140641-29140788,29140883-291409...    28   3.3  
01_04_0021 - 15151645-15151809,15152184-15152343,15152548-151530...    27   5.7  

>03_03_0196 +
           15331604-15331646,15332141-15332260,15334106-15334221,
           15334661-15334749,15334885-15334927,15335567-15335741,
           15335840-15335971,15336046-15336383,15336791-15337129,
           15337293-15337975,15338228-15338807,15339356-15339679,
           15340149-15340262
          Length = 1031

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 240 EGAHQLRLHNSRNKIQNKFR 181
           +G H  RLH++  +IQNKFR
Sbjct: 848 QGQHDTRLHSAAVRIQNKFR 867


>11_04_0048 + 12792270-12792276,12793453-12793697,12793866-12794741
          Length = 375

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 228 DAHPHVWDAKDARPSRLDNA 287
           +  PH+W A D+ P  +DNA
Sbjct: 144 NGEPHIWSAIDSMPCSMDNA 163


>05_07_0311 -
           29139883-29140359,29140641-29140788,29140883-29140959,
           29141227-29141387,29141785-29142803,29142905-29142996,
           29143117-29143256,29143397-29143574
          Length = 763

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 330 RIIKLRSGGITVITKRCQGGWVLHPSRPKHE 238
           ++I    GG+   +KR Q  WV+     KHE
Sbjct: 112 KVIPASPGGVATESKRAQASWVVLDKELKHE 142


>01_04_0021 -
           15151645-15151809,15152184-15152343,15152548-15153025,
           15153243-15153291,15153585-15153734
          Length = 333

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
 Frame = +3

Query: 213 YADAVDAHPHV---WDAKDARPS 272
           YA  VDA+PHV   W+A  ARP+
Sbjct: 183 YAGVVDAYPHVKAWWEALLARPT 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,184,091
Number of Sequences: 37544
Number of extensions: 173147
Number of successful extensions: 351
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)