Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3k19
         (469 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-7|CAA83010.2|  164|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AL132859-1|CAB60494.1|  276|Caenorhabditis elegans Hypothetical ...    27   6.7  
Z81015-6|CAE17725.1|  209|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U64837-3|AAB04837.1|  782|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z30423-7|CAA83010.2|  164|Caenorhabditis elegans Hypothetical
           protein T20G5.9 protein.
          Length = 164

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 315 RSGGITVITKRCQGGWVLHPSRPKHEGAHQLRLHNSRNKI 196
           R+ G     +R +GG++    +PK++   QL   N R+ +
Sbjct: 36  RADGTWRKARRVKGGYIPQDEQPKYQNKMQLEATNGRSSV 75


>AL132859-1|CAB60494.1|  276|Caenorhabditis elegans Hypothetical
           protein Y39C12A.1 protein.
          Length = 276

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 175 VLSKFILYFVSRIMQTQLMRTLMFGTRRMQDPAALTTLGNDCDPSAS 315
           +L  F L F   I  T+ +R +   TR  + P   T L   CDP+A+
Sbjct: 14  ILLHFCLCFQVPIRSTRELR-MKHKTRTRESPVVDTLLAAGCDPNAA 59


>Z81015-6|CAE17725.1|  209|Caenorhabditis elegans Hypothetical
           protein C11E4.8 protein.
          Length = 209

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 466 FFSVLKFIFAVTNQGKNQNKS*IFHYLL 383
           FF  L F F VT++ +  N S  FH  L
Sbjct: 118 FFLTLLFFFIVTDEDERTNSSHFFHRFL 145


>U64837-3|AAB04837.1|  782|Caenorhabditis elegans Hypothetical
           protein T27E4.6 protein.
          Length = 782

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/39 (30%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +1

Query: 121 Y*SLYHNKFQYFYF*FPVVL-SKFILYFVSRIMQTQLMR 234
           Y S +H   +YF++  P+V+ S F+ +F+S +++  ++R
Sbjct: 674 YTSFWH---EYFHYTIPIVIYSYFLAFFLSVVVEIPILR 709


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,393,216
Number of Sequences: 27780
Number of extensions: 163845
Number of successful extensions: 380
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)