Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3k19
         (469 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   5.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   5.0  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.7  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 119 FPVYDYKY-QMTLDDVTRIMSFTIIKSTYVL 30
           FP+Y YKY +  ++  +RI +   I S Y+L
Sbjct: 316 FPIYKYKYIREIMNKESRISA--AIDSGYIL 344


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 119 FPVYDYKY-QMTLDDVTRIMSFTIIKSTYVL 30
           FP+Y YKY +  ++  +RI +   I S Y+L
Sbjct: 316 FPIYKYKYIREIMNKESRISA--AIDSGYIL 344


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 294 ITKRCQGGWVLHP 256
           I ++  G WV+HP
Sbjct: 71  IRQKAAGHWVIHP 83


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 294 ITKRCQGGWVLHP 256
           I ++  G WV+HP
Sbjct: 71  IRQKAAGHWVIHP 83


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 294 ITKRCQGGWVLHP 256
           I ++  G WV+HP
Sbjct: 71  IRQKAAGHWVIHP 83


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 283 TLGNDCDPSAS*FYD 327
           TL  DCD   S F+D
Sbjct: 127 TLSYDCDVDVSTFFD 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,953
Number of Sequences: 438
Number of extensions: 2252
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)