Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3k18
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.54 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    28   1.3  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    26   5.0  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    26   6.7  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    26   6.7  
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr...    25   8.8  

>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
 Frame = +1

Query: 427 CFFNRVTFFKLLIVNYSGAYLQESKCI----FIYDKINAL-SIFSIIYCPL 564
           CF  R++ + LL ++ +  Y+Q + C+    F Y  INAL  +F+II+ PL
Sbjct: 170 CFKTRLSNWMLLPISANPWYIQVAFCVTSGFFSYLFINALYYLFAIIFVPL 220


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 407  GKILPASNPFTYEVNILSIYIKHIN 333
            G ++ + NPF + VN+LS+ I +IN
Sbjct: 2690 GTVVSSHNPFVFFVNVLSMAIGNIN 2714


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 722 LTTSFKYLYFNNILKVPVLVNTILNFILLQNKLNHSITYIHRQ 594
           L  +F+  Y  N+ K   L+ T  +F+L +  L+    Y HR+
Sbjct: 144 LEEAFRDFYIKNLEKTEDLIRTDSHFVLNKELLSFRNDYEHRR 186


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 48  FLCFCFSCTYLNNNTSKVFF 107
           ++CFC  C +++N TSK  F
Sbjct: 8   YVCFC--CAFISNTTSKSIF 25


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +1

Query: 283  HKIH*NRLINDNT*NDLFICFMYILKIFTSYVKGFEAGNIFPRK---NKNPCFFNRVTFF 453
            H  H N+    +  +DLF   + I  + TSY    E G   P     +K P FF+     
Sbjct: 1138 HSSHTNQSTGSSESDDLFNLDLPISNLETSYPFKIEEGQASPLSSPLSKTPPFFSSSVPL 1197

Query: 454  KLLI 465
            K LI
Sbjct: 1198 KALI 1201


>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -2

Query: 752 VIPDLNVKRYLTTSFKYLYFNNILKVPVLVNTILNFILLQNKLNHSIT 609
           V+ +     YL  SFK+L  + I  +P++  T     +     N  IT
Sbjct: 297 VLSENTKSNYLDASFKFLPTSRITGIPIISTTKSGVFVAAGHANWGIT 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,081
Number of Sequences: 5004
Number of extensions: 55016
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)