Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3k18
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0513 - 16681227-16683936,16685572-16685966                       29   3.0  
01_06_0995 + 33661367-33661380,33661729-33661826,33662059-336622...    29   5.3  
01_06_0994 + 33653055-33653144,33653219-33653310,33653483-336535...    29   5.3  
01_03_0014 + 11655216-11655287,11657833-11658048,11659848-116619...    28   7.0  

>04_03_0513 - 16681227-16683936,16685572-16685966
          Length = 1034

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = +1

Query: 307 INDNT*NDLFICFMYIL-KIFTSYVKGFE-AGNIFPRK--NKNPCFFNRVTFFKLLIVNY 474
           I +N  +D F C+M +L K+    +K  +  GN+ P    +KN C F ++  F L   N+
Sbjct: 746 IRNNRIDDKFPCWMSMLPKLQVLVLKSNKFVGNVGPSVPGDKNSCEFIKLRIFDLASNNF 805

Query: 475 SGAYLQE 495
           SG    E
Sbjct: 806 SGLLQNE 812


>01_06_0995 +
           33661367-33661380,33661729-33661826,33662059-33662214,
           33663307-33663926,33664020-33664090,33664176-33664427,
           33664494-33664611,33664715-33664886,33664970-33665511
          Length = 680

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 505 IFIYDKINALSIFSIIYCPLWAENGPSPFGCL 600
           + ++D  N +  F + + PLW   G   FG L
Sbjct: 622 VLVFDAANKVHTFKVSFSPLWKLQGDYTFGSL 653


>01_06_0994 +
           33653055-33653144,33653219-33653310,33653483-33653580,
           33653758-33653913,33654009-33654628,33654721-33654794,
           33654905-33655156,33655250-33655367,33655468-33655639,
           33655729-33656270
          Length = 737

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 505 IFIYDKINALSIFSIIYCPLWAENGPSPFGCL 600
           + ++D  N +  F + + PLW   G   FG L
Sbjct: 679 VLVFDAANKVHTFKVSFSPLWKLQGDYTFGSL 710


>01_03_0014 + 11655216-11655287,11657833-11658048,11659848-11661912,
            11662966-11663013,11663081-11663328,11663429-11663558,
            11663707-11663983,11664102-11664180,11664311-11664397,
            11664586-11664618
          Length = 1084

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 144  GVAKWLLEPTYIYNVN--APPTLRYKF*GLKYSYKLKSNGYVFDVIL 278
            GV+K L    Y Y+     P   RY+   L+  Y +KS+ Y F V+L
Sbjct: 991  GVSKQLHVEDYDYSYTRVVPQIFRYEAPELRGQYSVKSDVYAFGVVL 1037


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,973,332
Number of Sequences: 37544
Number of extensions: 290948
Number of successful extensions: 489
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)