Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3k18
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047657-6|AAK18946.1|  337|Caenorhabditis elegans Serpentine re...    28   6.2  
U88180-4|ABI18143.1|  114|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AF047657-6|AAK18946.1|  337|Caenorhabditis elegans Serpentine
           receptor, class h protein243 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 316 NT*NDLFICFMYILKIFTSYVKGFEAG 396
           NT +DLF+CF+ I  ++   + GF+ G
Sbjct: 65  NTLSDLFLCFIGIPFLYLPSISGFDLG 91


>U88180-4|ABI18143.1|  114|Caenorhabditis elegans Hypothetical
           protein T27A3.8 protein.
          Length = 114

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +2

Query: 398 IFFPAKIKILVFSIELLFLNYLL*TIVALICKKVNAYLFMTKLMH*VFFL 547
           IF P K+  L FS    F+      +++ IC+ +   L +T++M  V FL
Sbjct: 2   IFLPVKLAFLTFSSIPSFIAIHAAPVISFICEFLLLSLHITRMMLSVSFL 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,706,137
Number of Sequences: 27780
Number of extensions: 295337
Number of successful extensions: 578
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)