Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3k16
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    34   0.025
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.54 
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    29   0.94 
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    27   2.2  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    27   2.9  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    26   6.6  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   8.7  

>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 33.9 bits (74), Expect = 0.025
 Identities = 16/38 (42%), Positives = 27/38 (71%)
 Frame = +3

Query: 615 IVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFII 728
           I+SI +L  A++P+ SA L++ FGR+  L +G + FI+
Sbjct: 87  ILSIYLLVFAISPMISAPLSEVFGRRMLLQVGNVIFIV 124


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 603 QGSWIVSI-MILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWIL 740
           Q SW  +  MI C+A  P+   +  D +GRK TLL     F IG  L
Sbjct: 125 QVSWTATAYMISCTAFQPLFGKF-CDIYGRKKTLLAAYCVFGIGCFL 170


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 609 SWIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILG 743
           S  +++ +     T I S +L  +FGR   LL+ ++P  +  ILG
Sbjct: 389 SLTLNVFVFSMTTTAILSGFLMKRFGRFKMLLMISVPMYVLGILG 433


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 612 WIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWIL 740
           +I S   L + L  I +  LAD FGRK  + + +I  I+G I+
Sbjct: 131 FITSATSLGALLGGIIAGALADFFGRKPVIAIASIIIIVGSIV 173


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 603 QGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWIL 740
           Q   I S     + ++   S +LAD  GRK  LL     F+IG ++
Sbjct: 121 QKELITSATSFAALISATTSGWLADWVGRKRLLLCADAIFVIGSVI 166


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 669 LADKFGRKTTLL-LGAIPFIIGWILG 743
           L +KFG   TL+ LGA  ++IG +LG
Sbjct: 66  LCEKFGEPETLVVLGATLYVIGVMLG 91


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 183 VGLLVHDARRTRAMSWYRDGNE*ATERCFSRLSNERERRTI 61
           V +L  D+    ++S+  +  E   +RCFSR  N   R  +
Sbjct: 791 VSVLSKDSDLVNSVSYLHNSMEWFLQRCFSRFMNGSRRMNV 831


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,916
Number of Sequences: 5004
Number of extensions: 51043
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)