Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3k16
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-9|AAV34797.1|  475|Caenorhabditis elegans Hypothetical ...    35   0.071
AF002196-8|AAB53976.2|  586|Caenorhabditis elegans Hypothetical ...    35   0.071
U12965-9|AAA20605.3|  522|Caenorhabditis elegans Hypothetical pr...    34   0.094
U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical pr...    32   0.50 
AF039046-2|AAB94218.2|  516|Caenorhabditis elegans Hypothetical ...    29   2.7  
AC025726-24|AAK73926.2|  447|Caenorhabditis elegans Hypothetical...    29   2.7  
U28735-4|AAF99953.1|  488|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical ...    29   4.7  

>AF002196-9|AAV34797.1|  475|Caenorhabditis elegans Hypothetical
           protein C09D4.1b protein.
          Length = 475

 Score = 34.7 bits (76), Expect = 0.071
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +3

Query: 612 WIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIG-WI 737
           W   I +L   L  IP+A+L DK+G + ++LLGA+   +G WI
Sbjct: 80  WTSMIYMLTYILFFIPAAWLLDKWGLRLSVLLGALGNCVGAWI 122


>AF002196-8|AAB53976.2|  586|Caenorhabditis elegans Hypothetical
           protein C09D4.1a protein.
          Length = 586

 Score = 34.7 bits (76), Expect = 0.071
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +3

Query: 612 WIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIG-WI 737
           W   I +L   L  IP+A+L DK+G + ++LLGA+   +G WI
Sbjct: 191 WTSMIYMLTYILFFIPAAWLLDKWGLRLSVLLGALGNCVGAWI 233


>U12965-9|AAA20605.3|  522|Caenorhabditis elegans Hypothetical
           protein F23F12.3 protein.
          Length = 522

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +3

Query: 543 PSPTLLYLESEESSIPTTAYQGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLG-AIP 719
           P+P    ++  +    T AY  +WI +I  + + +  +   +L D FGRK    +G +I 
Sbjct: 75  PAPFHSMVQDFKMFCGTKAYDSAWIATIQFIGALVGALVYGHLGDHFGRKPVSFVGISIG 134

Query: 720 FIIGWILGY 746
            I G   G+
Sbjct: 135 IIFGVASGF 143


>U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical
           protein F23F12.13 protein.
          Length = 528

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 591 TTAYQGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLG-AIPFIIGWILGY 746
           T AY  +W+ +I  +   +  I   +L D FGRK     G ++  + G   G+
Sbjct: 91  TKAYDAAWVATIQFIGVLIGAITYGHLGDHFGRKPVSFFGISVGILFGVASGF 143


>AF039046-2|AAB94218.2|  516|Caenorhabditis elegans Hypothetical
           protein R09B5.11 protein.
          Length = 516

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +3

Query: 660 SAYLADKFGRKTTLLLGAI 716
           S +LADKFGRK+TLL   I
Sbjct: 118 SGFLADKFGRKSTLLYNNI 136


>AC025726-24|AAK73926.2|  447|Caenorhabditis elegans Hypothetical
           protein Y71G12B.25 protein.
          Length = 447

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +3

Query: 540 WPSPTLLYLESEESSIPTTAYQGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAI 716
           W +  L +L+ +   + T    G +I +   LC+A   + +  LAD  G ++  LL A+
Sbjct: 26  WTTTLLSFLQWDTEEVMTITDLG-YIQAFGSLCNAFGALAAGQLADTLGAQSMFLLSAV 83


>U28735-4|AAF99953.1|  488|Caenorhabditis elegans Hypothetical
           protein F48E3.2 protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +3

Query: 570 SEESSIPTTAYQGSW--IVSIMILCSALTPIPSAYLADKFGRKTTLLLG 710
           +E  ++  + ++ +W  +++I  +  A   + SA +AD+ GRK TL LG
Sbjct: 46  NEPYTLSNSEFEWAWSAMLAIYFIGFAAGSVISAGVADRIGRKWTLFLG 94


>AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical
           protein Y51A2D.5 protein.
          Length = 613

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = +3

Query: 612 WIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWIL 740
           WI  I+ +C+ + P    +  +K GR+   L      ++  +L
Sbjct: 320 WISVILSICNLIGPFAPMFFIEKLGRRKLFLFSCAGVVVSLVL 362


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,630,540
Number of Sequences: 27780
Number of extensions: 272455
Number of successful extensions: 663
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)