Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3k06
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    27   2.0  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   2.6  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    27   3.5  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   6.1  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    26   6.1  
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    25   8.0  

>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 416 LHRLLFVAAARYQRRHNVQGKGGRSVRELETSTGGLSWTFQFYSDLWHTYPQALWT 583
           L  L+  A A  +R   + G   ++V  + T +G L W    + DL  T P   WT
Sbjct: 291 LFTLILDAKALKRRTRGIIGLTIQAVVIMATLSGELGWIVSKHIDLHDTSPDLDWT 346


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 176 EYYFTFIRWPAT*KQAKCIQGREIKCVYGTDQ 271
           E Y  F  W    KQ + I  R+I+CVY T Q
Sbjct: 99  ENYHEF--WTEMEKQGRSIFDRKIRCVYSTKQ 128


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 521 LSWTFQFYSDLWHTYPQALWTDLACRRCGAPL 616
           L  TF F+SDL+  +P   W   A R    PL
Sbjct: 229 LDCTFSFFSDLFSRFPVQSWYSEAIRANLQPL 260


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 127 FLSDVNTPYGKFSIGKSESDEYSMK 53
           F SD N+    FS+G++ S  YS+K
Sbjct: 101 FKSDTNSTSSGFSVGEAISSGYSLK 125


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 167 LRFEYYFTFIRWPAT*KQAKCIQGREIKCVYGTDQTSLDRGK 292
           LR++    F RW A   +   I+   I  VY  DQ ++ +G+
Sbjct: 134 LRYDLTVPFARWLAMNPKVTSIKRFHIAKVYRRDQPAMTKGR 175


>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
 Frame = +3

Query: 15  KICCVKS*RKM--KSFIEYSSDSDFPIENLPY-GVFTSDKN--AQKHIGVAIGEWILDLN 179
           K+ CV S  ++  + F+E         ++  Y G +T +     QKH  + + EW+    
Sbjct: 263 KLRCVNSIAELPVREFLEAGVPFSINCDDPAYFGGYTLENYFAIQKHFNLTVKEWVF--- 319

Query: 180 IISHLFDGPLLKSKQNVFKEEKLNAFMALTKPHWIEARE--TLQKLLDVSS 326
           I +   +G  +  K+   KEE L++     K +  E ++  TL+  ++V +
Sbjct: 320 IANAAINGSWISGKR---KEELLSSVQKCVKEYTAEIQQPKTLETAVEVQA 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,239,342
Number of Sequences: 5004
Number of extensions: 72773
Number of successful extensions: 200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)