Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3k06
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0724 - 5415218-5415280,5415398-5415523,5415614-5415710,541... 210 1e-54
02_05_0020 + 25070664-25070692,25070934-25071513,25071605-250718... 32 0.51
05_05_0005 + 21442819-21442916,21443053-21443119,21443226-214432... 30 2.1
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 29 3.6
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 29 3.6
04_04_0707 - 27435894-27436474,27437707-27438241 29 3.6
01_06_0529 - 30026101-30026277,30026363-30026438,30026509-300265... 29 3.6
10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496 28 6.3
12_02_0880 + 23965602-23965614,23966150-23966370,23966467-239665... 28 8.4
>02_01_0724 -
5415218-5415280,5415398-5415523,5415614-5415710,
5415797-5415861,5415964-5416026,5416127-5416197,
5416430-5416489,5416564-5416663,5416863-5416938,
5417284-5417358,5417451-5417575,5417664-5417722,
5418031-5418109,5418303-5418533
Length = 429
Score = 210 bits (512), Expect = 1e-54
Identities = 104/223 (46%), Positives = 145/223 (65%), Gaps = 5/223 (2%)
Frame = +3
Query: 45 MKSFIEYSSDSDFPIENLPYGVFT---SDKNAQKHIGVAIGEWILDLNIISH--LFDGPL 209
++SF+E + S FPI+NLP+GVF S + VAIG++ LDL +S LF GPL
Sbjct: 9 LRSFVEVAPGSHFPIQNLPFGVFRRRGSPEPEPPRPAVAIGDFALDLAAVSDAGLFHGPL 68
Query: 210 LKSKQNVFKEEKLNAFMALTKPHWIEARETLQKLLDVSSPALQNNAELREKAFVKQTNVQ 389
L S F++E LN F+ + +P W EAR TLQK+L P L++N L++K V ++ +
Sbjct: 69 L-SASPCFRQETLNMFLGMGRPAWKEARATLQKILSADEPVLRDNEALKKKCLVPMSDTE 127
Query: 390 MHVPVEVGDYTDFYSSLQHATNVGIMFRGKEAALFENWKHLPVGYHGRSSSIVISGTPIH 569
M +P+ VGDYTDF+ S+ HA N G +FRG + + NW LPVGYHGR+SS+++SGT I
Sbjct: 128 MLLPITVGDYTDFFCSVHHARNCGFIFRGPQTPVNPNWFQLPVGYHGRASSVIVSGTDII 187
Query: 570 RPYGQTLPVEGAAPHFGPCKLMDFELEVGAFVGGPPTQLGERV 698
RP GQ P + P+FGP K +DFELE+ A V GP +LG+ +
Sbjct: 188 RPKGQGHPTGDSRPYFGPSKKLDFELEMAAIV-GPGNELGKPI 229
>02_05_0020 +
25070664-25070692,25070934-25071513,25071605-25071817,
25071918-25072207,25072301-25072412,25072539-25072763,
25072853-25073464
Length = 686
Score = 31.9 bits (69), Expect = 0.51
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Frame = +2
Query: 533 FQFYSDLWHTYP----QALWTDLACRRCGAPLRSLQTDGLRTGGGRVCRR 670
F+FYS W T+ QA W RR LR + R GG CRR
Sbjct: 614 FRFYSHQWRTWAACFIQAAWRRNKRRRASMELRMREGGEARPGGSVRCRR 663
>05_05_0005 + 21442819-21442916,21443053-21443119,21443226-21443291,
21443368-21443414,21443480-21443543,21443627-21443707,
21443781-21443823,21443912-21443961,21444262-21444343,
21445045-21445120,21445451-21445558,21445782-21445833,
21445911-21446570,21446652-21448067
Length = 969
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +3
Query: 204 PLLKSKQNVFKEEKLNAFMALTKPHWIEARETLQKLLDVSSPALQNNAELREKAFVKQ 377
P N KEE A AL + + E L+ LL++S+ L+NN L E A V Q
Sbjct: 880 PYTSEASNGVKEEASPAKEALDVTSFRQRAEALEGLLELSADLLENN-RLEELAIVLQ 936
>08_01_0441 +
3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 324 SPALQNNAELREKAFVKQTNVQMHVPVEVGDYTDFYSSLQHA 449
+P N E R++ F+ N ++ P+ VGDY DF + A
Sbjct: 398 APEDVRNDEERQEKFLGGLNDELSYPLMVGDYPDFQKLVDKA 439
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +3
Query: 276 HWIEARETLQKLLDVSSPALQNNAELREKAFVKQTNVQMHVPVE 407
+W E L+K L+ S LQ L EK N+Q H PVE
Sbjct: 167 YWKERAMQLEKTLEAS---LQRERSLEEKLEENIKNLQSHTPVE 207
>04_04_0707 - 27435894-27436474,27437707-27438241
Length = 371
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 114 TSDKNAQK-HIGVAIGEWILDLNIISHLFDGPLLKSKQNVFKEEKLNAFMAL 266
+S NA+ H+ + + +L+ I S F L+K +N KE+ LNAF L
Sbjct: 294 SSSPNARDIHLPSSFKDLVLERKI-SDAFSSELVKQSKNSGKEQNLNAFFEL 344
>01_06_0529 -
30026101-30026277,30026363-30026438,30026509-30026570,
30026882-30027031,30027213-30027338,30028096-30028305,
30028870-30028938,30029024-30029080,30029131-30029277,
30029358-30029542,30029623-30029698,30029796-30029918,
30030395-30030410,30031743-30032745,30033521-30033789,
30034297-30034415
Length = 954
Score = 29.1 bits (62), Expect = 3.6
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Frame = +3
Query: 186 SHLFDGPLLKSKQNVFKEEK--LNAFMALTKPHWIEARETLQKLLDVSSPALQNNAELRE 359
+HL + PL + V KEE L A K +E ET + L + +A +RE
Sbjct: 204 AHLCESPLFM-ELTVLKEENMLLKADAQFLKAKIVEFAETEEFLFKLEKERSLLDATVRE 262
Query: 360 ---KAFVKQTNVQMHVPVEVGDYTDFYSSLQH 446
+ V QT++ VP++ + + +LQH
Sbjct: 263 LEARFLVAQTDIWKVVPLQYDVWMEKVENLQH 294
>10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496
Length = 389
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 590 ACRRCGAPLRSLQTDGLRTGGGRVCRRAPHTTGR 691
A C A L ++ LR GGG CR A GR
Sbjct: 173 AAAGCAADLNAMCPAELRAGGGAACRSACDAFGR 206
>12_02_0880 +
23965602-23965614,23966150-23966370,23966467-23966503,
23966917-23967100,23967263-23967411,23967515-23967745,
23967850-23968039,23968124-23968433,23968658-23969050
Length = 575
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 48 KSFIEYSSDSDFPIENLPYGVFTSDKNAQKHIGV-AIGEWILDL-NIISHLF 197
+ F+EY+ ++PI++ +G S +G G+ I++L NIIS L+
Sbjct: 183 REFMEYTVSMNYPIDSWEFGNELSGSGIGASVGAEQYGKDIIELKNIISQLY 234
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,617,575
Number of Sequences: 37544
Number of extensions: 502403
Number of successful extensions: 1353
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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