Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3k06
         (708 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069144-1|AAL39289.1|  417|Drosophila melanogaster GH16063p pro...   234   1e-61
AE014296-753|AAF47833.2|  417|Drosophila melanogaster CG14993-PA...   234   1e-61
DQ352451-1|ABD22987.1| 3790|Drosophila melanogaster Nipped-A pro...    31   2.0  
AY142217-1|AAN52145.1| 3803|Drosophila melanogaster transformati...    31   2.0  
AE013599-60|AAF57342.2| 3805|Drosophila melanogaster CG33554-PA,...    31   2.0  
AE013599-59|ABI31023.1| 3628|Drosophila melanogaster CG33554-PC,...    31   2.0  
AE013599-58|ABI31022.1| 3400|Drosophila melanogaster CG33554-PB,...    31   2.0  
AY060712-1|AAL28260.1|  280|Drosophila melanogaster GH15448p pro...    30   3.5  
AF435962-1|AAL31972.1|  280|Drosophila melanogaster mitochondria...    30   3.5  
AE013599-3422|AAF46869.1|  280|Drosophila melanogaster CG4207-PA...    30   3.5  
X56689-1|CAA40017.1|  716|Drosophila melanogaster Protein on Ecd...    29   6.2  
BT001867-1|AAN71637.1|  502|Drosophila melanogaster SD02426p pro...    29   6.2  
AY118552-1|AAM49921.1|  693|Drosophila melanogaster LD34072p pro...    29   6.2  
AE014296-2942|AAF49317.3|  502|Drosophila melanogaster CG6143-PA...    29   6.2  
AE014296-2941|AAS64975.1|  693|Drosophila melanogaster CG6143-PC...    29   6.2  
AE014296-2940|AAF49319.3|  716|Drosophila melanogaster CG6143-PB...    29   6.2  
AF517634-1|AAM77747.1| 4876|Drosophila melanogaster BIR-containi...    29   8.2  
AE014297-1135|AAF54520.3| 4876|Drosophila melanogaster CG6303-PA...    29   8.2  

>AY069144-1|AAL39289.1|  417|Drosophila melanogaster GH16063p
           protein.
          Length = 417

 Score =  234 bits (572), Expect = 1e-61
 Identities = 113/217 (52%), Positives = 144/217 (66%)
 Frame = +3

Query: 48  KSFIEYSSDSDFPIENLPYGVFTSDKNAQKHIGVAIGEWILDLNIISHLFDGPLLKSKQN 227
           +SF+    +SDFP+ENLPY VF+++ N    I VAIGE +LDL  +S LF   + KS Q 
Sbjct: 3   QSFVPVPENSDFPLENLPYAVFSTENNKVHRICVAIGEHVLDLKAVSQLFPFQVQKSLQ- 61

Query: 228 VFKEEKLNAFMALTKPHWIEARETLQKLLDVSSPALQNNAELREKAFVKQTNVQMHVPVE 407
               E LN  M L    W   R   QKLL   S  L +N +L+  + V Q+ +++H+P +
Sbjct: 62  ---AETLNELMGLDFEAWDVVRSQTQKLLTKGSE-LDHNVDLKAVSIVPQSEIKLHLPAQ 117

Query: 408 VGDYTDFYSSLQHATNVGIMFRGKEAALFENWKHLPVGYHGRSSSIVISGTPIHRPYGQT 587
           +GDYTDFYSS+ HATNVGIMFRG + AL  NW+HLPVGYHGR+SS+V+SGTPI RP GQT
Sbjct: 118 IGDYTDFYSSIHHATNVGIMFRGPDNALMPNWRHLPVGYHGRASSVVVSGTPIRRPLGQT 177

Query: 588 LPVEGAAPHFGPCKLMDFELEVGAFVGGPPTQLGERV 698
            P     P FG CKL+DFELE+  F+GG   QLGE +
Sbjct: 178 FPDGAEKPVFGACKLLDFELEMAFFIGGKGNQLGEPI 214


>AE014296-753|AAF47833.2|  417|Drosophila melanogaster CG14993-PA
           protein.
          Length = 417

 Score =  234 bits (572), Expect = 1e-61
 Identities = 113/217 (52%), Positives = 144/217 (66%)
 Frame = +3

Query: 48  KSFIEYSSDSDFPIENLPYGVFTSDKNAQKHIGVAIGEWILDLNIISHLFDGPLLKSKQN 227
           +SF+    +SDFP+ENLPY VF+++ N    I VAIGE +LDL  +S LF   + KS Q 
Sbjct: 3   QSFVPVPENSDFPLENLPYAVFSTENNKVHRICVAIGEHVLDLKAVSQLFPFQVQKSLQ- 61

Query: 228 VFKEEKLNAFMALTKPHWIEARETLQKLLDVSSPALQNNAELREKAFVKQTNVQMHVPVE 407
               E LN  M L    W   R   QKLL   S  L +N +L+  + V Q+ +++H+P +
Sbjct: 62  ---AETLNELMGLDFEAWDVVRSQTQKLLTKGSE-LDHNVDLKAVSIVPQSEIKLHLPAQ 117

Query: 408 VGDYTDFYSSLQHATNVGIMFRGKEAALFENWKHLPVGYHGRSSSIVISGTPIHRPYGQT 587
           +GDYTDFYSS+ HATNVGIMFRG + AL  NW+HLPVGYHGR+SS+V+SGTPI RP GQT
Sbjct: 118 IGDYTDFYSSIHHATNVGIMFRGPDNALMPNWRHLPVGYHGRASSVVVSGTPIRRPLGQT 177

Query: 588 LPVEGAAPHFGPCKLMDFELEVGAFVGGPPTQLGERV 698
            P     P FG CKL+DFELE+  F+GG   QLGE +
Sbjct: 178 FPDGAEKPVFGACKLLDFELEMAFFIGGKGNQLGEPI 214


>DQ352451-1|ABD22987.1| 3790|Drosophila melanogaster Nipped-A protein.
          Length = 3790

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 228  VFKEEKLNAFMALTKPHWIEARETLQKLLDVSSPAL 335
            + K+  L  F +L K H +EAR  +++ LDV +PA+
Sbjct: 1827 IHKKIVLQVFHSLLKGHALEARSIVKQALDVLTPAM 1862


>AY142217-1|AAN52145.1| 3803|Drosophila melanogaster
            transformation/transcription domain-associated protein
            protein.
          Length = 3803

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 228  VFKEEKLNAFMALTKPHWIEARETLQKLLDVSSPAL 335
            + K+  L  F +L K H +EAR  +++ LDV +PA+
Sbjct: 1889 IHKKIVLQVFHSLLKGHALEARSIVKQALDVLTPAM 1924


>AE013599-60|AAF57342.2| 3805|Drosophila melanogaster CG33554-PA,
            isoform A protein.
          Length = 3805

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 228  VFKEEKLNAFMALTKPHWIEARETLQKLLDVSSPAL 335
            + K+  L  F +L K H +EAR  +++ LDV +PA+
Sbjct: 1891 IHKKIVLQVFHSLLKGHALEARSIVKQALDVLTPAM 1926


>AE013599-59|ABI31023.1| 3628|Drosophila melanogaster CG33554-PC,
            isoform C protein.
          Length = 3628

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 228  VFKEEKLNAFMALTKPHWIEARETLQKLLDVSSPAL 335
            + K+  L  F +L K H +EAR  +++ LDV +PA+
Sbjct: 1735 IHKKIVLQVFHSLLKGHALEARSIVKQALDVLTPAM 1770


>AE013599-58|ABI31022.1| 3400|Drosophila melanogaster CG33554-PB,
            isoform B protein.
          Length = 3400

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 228  VFKEEKLNAFMALTKPHWIEARETLQKLLDVSSPAL 335
            + K+  L  F +L K H +EAR  +++ LDV +PA+
Sbjct: 1565 IHKKIVLQVFHSLLKGHALEARSIVKQALDVLTPAM 1600


>AY060712-1|AAL28260.1|  280|Drosophila melanogaster GH15448p
           protein.
          Length = 280

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 276 HWIEARETLQKLLDVSSPALQNNAELREKAFVKQTNVQ 389
           HWI  +E+LQKL D+     +N  E R +A+ KQ   Q
Sbjct: 182 HWITRKESLQKLTDI---YCENLKEERLEAYHKQLQAQ 216


>AF435962-1|AAL31972.1|  280|Drosophila melanogaster mitochondrial
           ribosomal proteinS15 protein.
          Length = 280

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 276 HWIEARETLQKLLDVSSPALQNNAELREKAFVKQTNVQ 389
           HWI  +E+LQKL D+     +N  E R +A+ KQ   Q
Sbjct: 182 HWITRKESLQKLTDI---YCENLKEERLEAYHKQLQAQ 216


>AE013599-3422|AAF46869.1|  280|Drosophila melanogaster CG4207-PA
           protein.
          Length = 280

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 276 HWIEARETLQKLLDVSSPALQNNAELREKAFVKQTNVQ 389
           HWI  +E+LQKL D+     +N  E R +A+ KQ   Q
Sbjct: 182 HWITRKESLQKLTDI---YCENLKEERLEAYHKQLQAQ 216


>X56689-1|CAA40017.1|  716|Drosophila melanogaster Protein on
           Ecdysone Puffs protein.
          Length = 716

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = -2

Query: 551 DHYRTGTSMITHR*MFPVLEQSGLLSPEHYAYVGSVLQRRIEVCVISDFNRHVHLNVRLL 372
           + YR   +MI       + EQ   +  +    +G   QR+++ C + D N H H++    
Sbjct: 249 ESYRLKANMIRQE--AKIAEQLKSIEFDRLKRMGKSKQRQLDYCTMCDLNFHGHISTHRK 306

Query: 371 HEG 363
            EG
Sbjct: 307 SEG 309


>BT001867-1|AAN71637.1|  502|Drosophila melanogaster SD02426p
           protein.
          Length = 502

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = -2

Query: 551 DHYRTGTSMITHR*MFPVLEQSGLLSPEHYAYVGSVLQRRIEVCVISDFNRHVHLNVRLL 372
           + YR   +MI       + EQ   +  +    +G   QR+++ C + D N H H++    
Sbjct: 35  ESYRLKANMIRQE--AKIAEQLKSIEFDRLKRMGKSKQRQLDYCTMCDLNFHGHISTHRK 92

Query: 371 HEG 363
            EG
Sbjct: 93  SEG 95


>AY118552-1|AAM49921.1|  693|Drosophila melanogaster LD34072p
           protein.
          Length = 693

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = -2

Query: 551 DHYRTGTSMITHR*MFPVLEQSGLLSPEHYAYVGSVLQRRIEVCVISDFNRHVHLNVRLL 372
           + YR   +MI       + EQ   +  +    +G   QR+++ C + D N H H++    
Sbjct: 226 ESYRLKANMIRQE--AKIAEQLKSIEFDRLKRMGKSKQRQLDYCTMCDLNFHGHISTHRK 283

Query: 371 HEG 363
            EG
Sbjct: 284 SEG 286


>AE014296-2942|AAF49317.3|  502|Drosophila melanogaster CG6143-PA,
           isoform A protein.
          Length = 502

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = -2

Query: 551 DHYRTGTSMITHR*MFPVLEQSGLLSPEHYAYVGSVLQRRIEVCVISDFNRHVHLNVRLL 372
           + YR   +MI       + EQ   +  +    +G   QR+++ C + D N H H++    
Sbjct: 35  ESYRLKANMIRQE--AKIAEQLKSIEFDRLKRMGKSKQRQLDYCTMCDLNFHGHISTHRK 92

Query: 371 HEG 363
            EG
Sbjct: 93  SEG 95


>AE014296-2941|AAS64975.1|  693|Drosophila melanogaster CG6143-PC,
           isoform C protein.
          Length = 693

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = -2

Query: 551 DHYRTGTSMITHR*MFPVLEQSGLLSPEHYAYVGSVLQRRIEVCVISDFNRHVHLNVRLL 372
           + YR   +MI       + EQ   +  +    +G   QR+++ C + D N H H++    
Sbjct: 226 ESYRLKANMIRQE--AKIAEQLKSIEFDRLKRMGKSKQRQLDYCTMCDLNFHGHISTHRK 283

Query: 371 HEG 363
            EG
Sbjct: 284 SEG 286


>AE014296-2940|AAF49319.3|  716|Drosophila melanogaster CG6143-PB,
           isoform B protein.
          Length = 716

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = -2

Query: 551 DHYRTGTSMITHR*MFPVLEQSGLLSPEHYAYVGSVLQRRIEVCVISDFNRHVHLNVRLL 372
           + YR   +MI       + EQ   +  +    +G   QR+++ C + D N H H++    
Sbjct: 249 ESYRLKANMIRQE--AKIAEQLKSIEFDRLKRMGKSKQRQLDYCTMCDLNFHGHISTHRK 306

Query: 371 HEG 363
            EG
Sbjct: 307 SEG 309


>AF517634-1|AAM77747.1| 4876|Drosophila melanogaster BIR-containing
            ubiquitin-conjugatingenzyme protein.
          Length = 4876

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 682  CVGGPPTNAPTSSSKSISLQGPKWGAAPST 593
            CVGGP +++  +S  + S   PK  A P T
Sbjct: 2264 CVGGPSSSSGNTSKSAASSSSPKNQAVPGT 2293


>AE014297-1135|AAF54520.3| 4876|Drosophila melanogaster CG6303-PA
            protein.
          Length = 4876

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 682  CVGGPPTNAPTSSSKSISLQGPKWGAAPST 593
            CVGGP +++  +S  + S   PK  A P T
Sbjct: 2264 CVGGPSSSSGNTSKSAASSSSPKNQAVPGT 2293


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,572,066
Number of Sequences: 53049
Number of extensions: 831893
Number of successful extensions: 2545
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2541
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3128965752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)