Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3k06
(708 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39852-6|AAK39259.1| 418|Caenorhabditis elegans Hypothetical pr... 289 2e-78
U97403-6|AAB52471.2| 583|Caenorhabditis elegans Hypothetical pr... 31 0.61
Z81127-8|CAB03393.2| 495|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z77652-14|CAB01123.2| 495|Caenorhabditis elegans Hypothetical p... 30 1.9
U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un... 29 3.3
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un... 29 3.3
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein. 29 3.3
U23523-3|AAC46558.2| 152|Caenorhabditis elegans Hypothetical pr... 29 4.3
U00066-1|AAA50742.1| 490|Caenorhabditis elegans High incidence ... 29 4.3
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ... 29 4.3
AF016416-7|AAB65272.2| 307|Caenorhabditis elegans Hypothetical ... 28 7.5
AF047661-5|AAU05544.1| 822|Caenorhabditis elegans Hypothetical ... 27 9.9
>U39852-6|AAK39259.1| 418|Caenorhabditis elegans Hypothetical
protein K10C2.4 protein.
Length = 418
Score = 289 bits (708), Expect = 2e-78
Identities = 132/218 (60%), Positives = 166/218 (76%)
Frame = +3
Query: 45 MKSFIEYSSDSDFPIENLPYGVFTSDKNAQKHIGVAIGEWILDLNIISHLFDGPLLKSKQ 224
MKSF+ +SDFPI+NLPYGVF++ ++ +HIGVAIG+ IL+L I++LFDGP LK+ Q
Sbjct: 1 MKSFVSVPQNSDFPIQNLPYGVFSTKADSSRHIGVAIGDQILNLAEIANLFDGPQLKAHQ 60
Query: 225 NVFKEEKLNAFMALTKPHWIEARETLQKLLDVSSPALQNNAELREKAFVKQTNVQMHVPV 404
+VFK+ LNAFMAL +P W+EAR +Q+LL L++NA LR +A V Q++ MH+P
Sbjct: 61 DVFKQSTLNAFMALPRPAWLEARARIQQLLSEDCAVLRDNAHLRSRALVAQSDATMHLPA 120
Query: 405 EVGDYTDFYSSLQHATNVGIMFRGKEAALFENWKHLPVGYHGRSSSIVISGTPIHRPYGQ 584
++GDYTDFYSS+ HATNVGIMFRGKE AL NWK LPVGYHGR+SSIV+SGT + RP GQ
Sbjct: 121 QIGDYTDFYSSIHHATNVGIMFRGKENALMPNWKWLPVGYHGRASSIVVSGTDLKRPVGQ 180
Query: 585 TLPVEGAAPHFGPCKLMDFELEVGAFVGGPPTQLGERV 698
T + P FGP KLMDFELE+ FVGGP +LG RV
Sbjct: 181 TKAPDAEVPSFGPSKLMDFELEMAFFVGGPENELGTRV 218
>U97403-6|AAB52471.2| 583|Caenorhabditis elegans Hypothetical
protein T10E9.3 protein.
Length = 583
Score = 31.5 bits (68), Expect = 0.61
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = +3
Query: 24 CVKS*RKMKSFIEYSSDSDFPIENLPYGVFTSDKNAQKHIGVAIGEWILDLNIISHLFDG 203
C K+ IE+ D D + + VF + K + + +GE + DLN+I +
Sbjct: 198 CSTGGEDQKNRIEWKVDGDL----IYFSVFQNAKKGRWWTAIGVGESMNDLNMILLFAEN 253
Query: 204 PLLKSKQNVFKEE 242
LK KQ +FK E
Sbjct: 254 GRLK-KQGIFKTE 265
>Z81127-8|CAB03393.2| 495|Caenorhabditis elegans Hypothetical
protein C06B3.3 protein.
Length = 495
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = +3
Query: 156 GEWILDLNIISHLFDGPLLKSKQNVFKE--EKLNAFMALTKPHWIEARETLQKLLDVSSP 329
G++ +D N + + D LLK KQN + ++ N M +T WI +ET L +
Sbjct: 261 GDYEIDPNNVEDIVDAFLLKMKQNPKSDVYDENNLKMLIT-DLWITGQETTTTTLVSAFI 319
Query: 330 ALQNNAELR---EKAFVKQTN 383
NN ++ +K +K TN
Sbjct: 320 QFLNNPQVMDTVQKELIKVTN 340
>Z77652-14|CAB01123.2| 495|Caenorhabditis elegans Hypothetical
protein C06B3.3 protein.
Length = 495
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = +3
Query: 156 GEWILDLNIISHLFDGPLLKSKQNVFKE--EKLNAFMALTKPHWIEARETLQKLLDVSSP 329
G++ +D N + + D LLK KQN + ++ N M +T WI +ET L +
Sbjct: 261 GDYEIDPNNVEDIVDAFLLKMKQNPKSDVYDENNLKMLIT-DLWITGQETTTTTLVSAFI 319
Query: 330 ALQNNAELR---EKAFVKQTN 383
NN ++ +K +K TN
Sbjct: 320 QFLNNPQVMDTVQKELIKVTN 340
>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform a protein.
Length = 1837
Score = 29.1 bits (62), Expect = 3.3
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Frame = +3
Query: 240 EKLNAFMALTKPHWIEARETLQKLLDVSSPALQNNAELREKAFVKQTNVQMH---VPVEV 410
+ L+ L P ++ ++ L L + PA+ +N ++R FVK +++ + V V +
Sbjct: 92 KSLDQLPFLRNPAFLVGKDDLTLLSYLHEPAVLHNLQVR---FVKGSSIYTYCGIVLVAI 148
Query: 411 GDYTD---FYSS--LQHATNVGIMFRGKEAALFE--NWKHLPVGYHGRSSSIVISG 557
Y D Y +Q G R + +F H +G G+S SI++SG
Sbjct: 149 NPYADCSHIYGEEIIQVYRGAGKSAREMDPHIFAVAEEAHFDMGAFGKSQSIIVSG 204
>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform b protein.
Length = 1839
Score = 29.1 bits (62), Expect = 3.3
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Frame = +3
Query: 240 EKLNAFMALTKPHWIEARETLQKLLDVSSPALQNNAELREKAFVKQTNVQMH---VPVEV 410
+ L+ L P ++ ++ L L + PA+ +N ++R FVK +++ + V V +
Sbjct: 92 KSLDQLPFLRNPAFLVGKDDLTLLSYLHEPAVLHNLQVR---FVKGSSIYTYCGIVLVAI 148
Query: 411 GDYTD---FYSS--LQHATNVGIMFRGKEAALFE--NWKHLPVGYHGRSSSIVISG 557
Y D Y +Q G R + +F H +G G+S SI++SG
Sbjct: 149 NPYADCSHIYGEEIIQVYRGAGKSAREMDPHIFAVAEEAHFDMGAFGKSQSIIVSG 204
>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
Length = 1839
Score = 29.1 bits (62), Expect = 3.3
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Frame = +3
Query: 240 EKLNAFMALTKPHWIEARETLQKLLDVSSPALQNNAELREKAFVKQTNVQMH---VPVEV 410
+ L+ L P ++ ++ L L + PA+ +N ++R FVK +++ + V V +
Sbjct: 92 KSLDQLPFLRNPAFLVGKDDLTLLSYLHEPAVLHNLQVR---FVKGSSIYTYCGIVLVAI 148
Query: 411 GDYTD---FYSS--LQHATNVGIMFRGKEAALFE--NWKHLPVGYHGRSSSIVISG 557
Y D Y +Q G R + +F H +G G+S SI++SG
Sbjct: 149 NPYADCSHIYGEEIIQVYRGAGKSAREMDPHIFAVAEEAHFDMGAFGKSQSIIVSG 204
>U23523-3|AAC46558.2| 152|Caenorhabditis elegans Hypothetical
protein F53A9.3 protein.
Length = 152
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +3
Query: 468 FRGKEAALFENWKHLPVGYHGRSSSIVISGTPIHRPYGQTLPVEGAAPHF 617
FR +E ++ WK + Y+ +S IS + R L VEG PHF
Sbjct: 15 FRDEEKGIYAQWK-IKGFYYRKSGLPKISIKGVARVRYSQLEVEGKLPHF 63
>U00066-1|AAA50742.1| 490|Caenorhabditis elegans High incidence of
males (increasedx chromosome loss) protein 10 protein.
Length = 490
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 210 LKSKQNVFKEEKLNAFMALTKPH-WIEARETLQKLLDVSSPALQNNAELREK 362
L++++ EK N + + K H W E RE + L+DV S L+ E+ E+
Sbjct: 278 LEAREICINSEK-NVPVIIEKIHQWTEVREVIIDLIDVESENLRKLKEMEEQ 328
>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
protein Y80D3A.8 protein.
Length = 1293
Score = 28.7 bits (61), Expect = 4.3
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +3
Query: 294 ETLQKLLDVSSPALQNNA-ELREKAFVKQTNVQMHVPVEVGDYTDFYSSLQHATNVGIMF 470
E ++KL +V A NN EK ++ + ++ +GD T+ S+++ VG
Sbjct: 117 ELIKKLKEVRQSAAANNEISPMEKRALEWEDYRLRSEF-IGDVTNLTGSVEYFNAVGNFQ 175
Query: 471 RGKEAALFENWKHLPVGYHGRSSSIVIS 554
R ++LFE+ G++ +SI+ S
Sbjct: 176 RDFNSSLFESTAEKFDGFNEHITSILKS 203
>AF016416-7|AAB65272.2| 307|Caenorhabditis elegans Hypothetical
protein F29A7.2 protein.
Length = 307
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 19 FAVSSRSVK*NLS*NTRQIQIFQSKIYRTVCLRLIKMPKNTSAW 150
F++ SR+ K ++ +Q Q + +++CL +IK P N +
Sbjct: 20 FSLCSRAAKSRVTQLKLNVQTIQVTVEKSLCLLIIKSPNNAKKY 63
>AF047661-5|AAU05544.1| 822|Caenorhabditis elegans Hypothetical
protein M70.4 protein.
Length = 822
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +3
Query: 444 HATNVGIMFRGKEAALFENWKHLPVGYHGRSSSIVISGTPIHRPYGQTLPVEGA 605
H T + + LFE LP+ G + I G P+HR L GA
Sbjct: 204 HETVAKFLEENTQQKLFEGCFDLPIAEIGGEVELKIDGPPVHRADESKLAELGA 257
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,162,226
Number of Sequences: 27780
Number of extensions: 423150
Number of successful extensions: 1183
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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