Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3k02
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 237 1e-63
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 226 3e-60
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 225 4e-60
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 193 2e-50
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 167 1e-42
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 95 1e-20
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 88 1e-18
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 58 2e-09
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 25 8.1
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 25 8.1
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 237 bits (579), Expect = 1e-63
Identities = 112/154 (72%), Positives = 130/154 (84%)
Frame = +1
Query: 247 GTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTN 426
GTVIGIDLGTTYSCV V KNGRVEIIANDQGNRITPSYVAFT+D ERL+G+AAKNQ +N
Sbjct: 35 GTVIGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTED-ERLVGEAAKNQAPSN 93
Query: 427 PENTVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAM 606
PENT+FD KRLIGR++ ++T+ D+K FPF +V ++P V+V K F PEEISAM
Sbjct: 94 PENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAM 153
Query: 607 VLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQ 708
+L+KMK+TAEAYLGK VTHAVVTVPAYFNDAQRQ
Sbjct: 154 ILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQ 187
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 226 bits (552), Expect = 3e-60
Identities = 110/151 (72%), Positives = 124/151 (82%)
Frame = +1
Query: 256 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 435
IGIDLGTTYSCVG + N RVEIIANDQGNR TPSYVAFT D ERLIGDAAKNQ+ NP N
Sbjct: 5 IGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPHN 63
Query: 436 TVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAMVLT 615
T+FDAKRLIGR++ D VQ D+K +PFKV+ K+ KP +QV+ K F PEEIS+MVL
Sbjct: 64 TIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSMVLM 123
Query: 616 KMKETAEAYLGKKVTHAVVTVPAYFNDAQRQ 708
KM+ETAEAYLG KVT AVVTVPAYFND+QRQ
Sbjct: 124 KMRETAEAYLGGKVTDAVVTVPAYFNDSQRQ 154
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 225 bits (551), Expect = 4e-60
Identities = 109/151 (72%), Positives = 125/151 (82%)
Frame = +1
Query: 256 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 435
IGIDLGTTYSCVG + N RVEIIANDQGNR TPSYVAFT D ERLIGDAAKNQ+ NP N
Sbjct: 5 IGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPHN 63
Query: 436 TVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAMVLT 615
T+FDAKRLIGR ++D VQ D+K +PFKV+EK+ KP +QV+ K F PEEIS+MVL
Sbjct: 64 TIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSMVLL 123
Query: 616 KMKETAEAYLGKKVTHAVVTVPAYFNDAQRQ 708
KM+E+AEA+LG KVT AVVTVPAYFND+QRQ
Sbjct: 124 KMRESAEAFLGGKVTDAVVTVPAYFNDSQRQ 154
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 193 bits (470), Expect = 2e-50
Identities = 94/150 (62%), Positives = 112/150 (74%)
Frame = +1
Query: 256 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 435
IGIDLGTTYSCV V++ VEII NDQG R TPS+VAFT+ ERL+GDAAKNQ NP N
Sbjct: 9 IGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTET-ERLVGDAAKNQAAMNPRN 67
Query: 436 TVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAMVLT 615
TVFDAKRLIGR + D Q D+K +PFKV++ N P ++V K F +EISAMVLT
Sbjct: 68 TVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAMVLT 127
Query: 616 KMKETAEAYLGKKVTHAVVTVPAYFNDAQR 705
KMKE +EA L K+V AV+TVPAYF+D+QR
Sbjct: 128 KMKEISEAKLNKRVEKAVITVPAYFSDSQR 157
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 167 bits (407), Expect = 1e-42
Identities = 83/154 (53%), Positives = 110/154 (71%)
Frame = +1
Query: 247 GTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTN 426
G VIGIDLGTT SC+ + + ++IAN +G R TPS VAFT+DGERL+G +AK Q N
Sbjct: 50 GPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVIN 109
Query: 427 PENTVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAM 606
PENT F KRLIGR + + VQ D+K P+K+VE +S ++ ++G K ++P +I
Sbjct: 110 PENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVE-HSNGDAWLE-ARG-KTYSPSQIGGF 166
Query: 607 VLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQ 708
+L+KM+ETA YLGK V +AVVTVPAYFND+QRQ
Sbjct: 167 ILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQ 200
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 94.7 bits (225), Expect = 1e-20
Identities = 52/153 (33%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Frame = +1
Query: 253 VIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPE 432
V+GID G + + + V +N +++I N+ NR TPS V++ + R +G+AAK+ +N
Sbjct: 7 VVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERS-RFLGEAAKSAEASNFR 65
Query: 433 NTVFDAKRLIGREWSDQTVQH-DVKFFPFKVVEKNSKPHVQVQTSQGDKVFAPEEISAMV 609
NTV KRL GR + D ++ + F K+ E + +VQ + F+ ++ A
Sbjct: 66 NTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLIAAY 125
Query: 610 LTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQ 708
TK+K AEA L V+ V+++PA+F D QR+
Sbjct: 126 FTKIKAIAEAELIGSVSDVVISIPAWFTDIQRR 158
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 87.8 bits (208), Expect = 1e-18
Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 4/157 (2%)
Frame = +1
Query: 250 TVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNP 429
TVIGI G S + ++G+ +++AN++GNR PS +++ D E G A+ QL N
Sbjct: 25 TVIGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQE-YHGVQARGQLVRNA 83
Query: 430 ENTVFDAKRLIGREWSDQTVQH-DVKFFPFKVVEK-NSKPHVQV--QTSQGDKVFAPEEI 597
+N+V + + L+G+ + T+ H P V + K VQ ++ +K+ E
Sbjct: 84 DNSVTNFRDLLGKSHDELTLHHCHYSANPVNVEGQIGFKITVQEDEESDPKEKILTAHEA 143
Query: 598 SAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQ 708
S L ++ E+AE +LG KV V++VP YF DAQR+
Sbjct: 144 SVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRK 180
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 57.6 bits (133), Expect = 2e-09
Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 3/155 (1%)
Frame = +1
Query: 250 TVIGIDLGTTYSCVGVYKNG-RVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTN 426
+V+ ID GT ++ + K G +EI+ R S VAF + ER+ G A N T
Sbjct: 23 SVLAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAF-KGNERIFGVDASNLATRF 81
Query: 427 PENTVFDAKRLIGREWSDQT-VQHDVKFFPFKVVEKNSKPHVQVQTSQGDKV-FAPEEIS 600
P +++ + K L+ + VQ +P + +N + + D+ ++ EEI
Sbjct: 82 PAHSIRNVKELLDTAGLESVLVQKYQSSYPAIQLVENEETTSGISFVISDEENYSLEEII 141
Query: 601 AMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQR 705
AM + AE +K+T V+TVP +FN+ QR
Sbjct: 142 AMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQR 176
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 379 GERLIGDAAKNQLTTNPENT 438
GE ++ D+ N TNP+NT
Sbjct: 6 GENIVSDSIVNMELTNPDNT 25
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 371 VKATYEGVMRFPWS 330
+K TYEG +R PWS
Sbjct: 284 MKLTYEGELRAPWS 297
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,570
Number of Sequences: 5004
Number of extensions: 55589
Number of successful extensions: 172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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