Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3j24
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr 1||...   120   2e-28
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    27   2.6  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   2.6  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    27   2.6  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    27   2.6  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    26   5.9  
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    25   7.8  

>SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 289

 Score =  120 bits (290), Expect = 2e-28
 Identities = 60/170 (35%), Positives = 102/170 (60%)
 Frame = +1

Query: 187 EEAVDCYLRAANLFKMAKKWPQAGQAFCNAAQLHLKAGVRHDAATNFVDASNCYKKCDAN 366
           +EA + +L AAN +++ K+   AG AF  AA++ LK   + DAA+ +V+A   Y++   +
Sbjct: 32  DEASELFLDAANGYRLQKQGSAAGYAFEKAAEMQLKTDDKDDAASTYVEAFKSYRREKPS 91

Query: 367 EAVSCLLKAIEIYTDMGRFTVAAKQHQNIAELYETECVDLARAMQHYEQAADYFRGEEST 546
           EA   L  AIE++T  G F  AA    ++ +++E E  D   A+  YE A +++  +++ 
Sbjct: 92  EAARVLQIAIELFTRRGNFRRAANYKMDLGDIFEQELQDTKAALGAYEDAGEWYSSDQAD 151

Query: 547 SSANKCMLKLAQYAAQLEHYDKAIQIYEQIAKSSLDNSLLKYSAKEYMFR 696
           + ANK  LK A  A     Y  AI+ +EQ+A++S+ N+LLK+S K+Y+ +
Sbjct: 152 ALANKAYLKAADLAGLCGEYSLAIRKFEQVARASVQNNLLKWSVKDYLLK 201


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 538 ESTSSANKCMLKLAQYAAQLEHYDKAIQIYEQIAKSSLDNSLLKYSA 678
           ++TS      L +A    Q+E +   I   ++  +S++DNS L Y A
Sbjct: 8   KTTSKKEPKQLDIAASDQQIEQWSDQIHKLDKAIRSTIDNSRLFYDA 54


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 598 EHYDKAIQIYEQIAKSSLDNSL 663
           EHYD+A+Q  +Q+ ++ L+ SL
Sbjct: 277 EHYDRAMQYLKQLVENILNRSL 298


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1261

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +1

Query: 274  AAQLHLKAGVRHDAATNFVDASNCYKKCDANEAVSCLLKAIEIYTDMGRFTVA 432
            A   ++ A  +HDA    +DA+    + ++  A   +++ I+I +DM R+ V+
Sbjct: 1090 ATSCYMNALAKHDAGEIQLDANLFQSQIESLIANDRIVEGIQIVSDMKRYNVS 1142


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 571 KLAQYAAQLEHYDKAIQIYEQIAKSSLDNSLLKYSA 678
           KLA Y+  L  Y  A QIYE  ++   ++    YSA
Sbjct: 398 KLADYSFMLRDYSHANQIYEIASRQYENDGACLYSA 433


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 322 NFVDASNCYKKCDANEAVSCLLK 390
           N+ +ASNCY+  D     +C +K
Sbjct: 319 NYREASNCYRALDRTYVQNCRIK 341


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 558 QVHAEAGAVRRPARALRQGHTD 623
           Q+  +AG V+RP + +  GH D
Sbjct: 182 QICRQAGLVKRPTKDVHDGHED 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,186,473
Number of Sequences: 5004
Number of extensions: 36302
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)