Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3j18
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb...    36   0.008
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    27   2.7  
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    27   3.5  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    27   3.5  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    26   6.2  

>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 26/94 (27%), Positives = 44/94 (46%)
 Frame = +2

Query: 404 DILRREVDSIKKNSQKSLRFKRFQVVETGASNCIFVKTNLPSPEELTTAIIKDLIATRIQ 583
           D + +E++S++K ++K L       +        FVKT  P           ++  T+ +
Sbjct: 86  DAVAKEINSLQKKNKKEL----LTPIMLDMPCVYFVKTRPPIDPVRLVEFTCEVGKTK-K 140

Query: 584 KTRHVMRLLPIMITCKANLPDIMESAGKLFDKYF 685
            TR+  RL+PI+ T   +L D+ E A  L D  F
Sbjct: 141 MTRYTQRLIPIVRTTGVSLDDLEELAKSLIDPLF 174


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 245 KDCVKEVYNLLNEYASKLYPDLDVEQV 325
           K  V EV +L+N+   +L+PD D +++
Sbjct: 538 KQLVAEVTDLINKLGPELFPDFDPDRI 564


>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 464 KRFQVVETGASNCIFVKTNLPSPEELTTAIIKDLIATRIQKTRHVMRLL 610
           K+FQ+    +SN + +K ++   EE   A +KD+   R     H  R L
Sbjct: 170 KKFQLDSATSSNVLPLKRHMVPYEEFLDAYLKDVNTLRTVIKEHWSRFL 218


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +2

Query: 254 VKEVYNLLNEYASKLYPDLDVEQVPPSA 337
           +KE+ N +  +  +L PDL+++ + P +
Sbjct: 525 IKEIVNEIEAWRQQLSPDLEIQNIGPDS 552


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 264 TSLTQSFSLKLHVQKKPLKPGSK 196
           TSL Q FSL+L  +   L PGS+
Sbjct: 356 TSLMQGFSLRLQNELSKLYPGSR 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,269
Number of Sequences: 5004
Number of extensions: 50895
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)