Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3j18
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0123 + 20334350-20334553,20335059-20335490,20336052-203361...    54   1e-07
05_04_0114 + 18090593-18092248                                         28   6.4  
05_04_0314 - 20133281-20133824,20133911-20134991,20135116-20135488     28   8.5  

>11_06_0123 +
           20334350-20334553,20335059-20335490,20336052-20336191,
           20336281-20336401,20337110-20337250,20337421-20337663
          Length = 426

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
 Frame = +2

Query: 416 REVDSIKKNSQKSL--RFKR-FQVVETGASNCIFVKTNL----PSPEELTTAIIKDLIAT 574
           + +D +     K L  R KR F  +++G + CIF++ +     P P E+   ++    +T
Sbjct: 194 KPIDDLIDEDLKELGDRKKRLFATLDSGCNGCIFIQMHKRDGDPGPVEIVQNMMSSAAST 253

Query: 575 RIQKTRHVMRLLPIMITCKANLPDIMESAGKLFDKYFLKEPTS 703
           R   +R ++R LP  +TC A+  +I ++   L +KYF KE +S
Sbjct: 254 RKHMSRFILRFLPTEVTCYASEEEITKAISPLVEKYFPKESSS 296



 Score = 31.1 bits (67), Expect = 0.91
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 197 LEPGFKGFFCTCN-FREKDCVKEVYNLLNEYASKL 298
           L PG +GFF TC+  RE+   +E  +LL+ +   L
Sbjct: 39  LRPGVQGFFLTCDGGRERQATREALSLLDSFYEDL 73


>05_04_0114 + 18090593-18092248
          Length = 551

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 263 VYNLLNEYASKLYPDLDVEQVPPSAVP 343
           V+N LN YA+ L+  L+    PP+AVP
Sbjct: 377 VWNALNYYAA-LFDALEASSTPPAAVP 402


>05_04_0314 - 20133281-20133824,20133911-20134991,20135116-20135488
          Length = 665

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 456 YGLKDFKWLKRVHQIVSLLKPIYLVQR 536
           Y L D  W K+V  I+S  +PIY + R
Sbjct: 389 YKLTDNSWWKQVDYILSFTEPIYSMMR 415


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,456,157
Number of Sequences: 37544
Number of extensions: 294488
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)