Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3j18
         (716 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC000448-1|AAH00448.1|  353|Homo sapiens THUMP domain containing...   101   2e-21
AK000281-1|BAA91050.1|  353|Homo sapiens protein ( Homo sapiens ...   101   3e-21
AC004381-1|AAC31666.1|  242|Homo sapiens Unknown gene product pr...    69   1e-11

>BC000448-1|AAH00448.1|  353|Homo sapiens THUMP domain containing 1
           protein.
          Length = 353

 Score =  101 bits (243), Expect = 2e-21
 Identities = 64/178 (35%), Positives = 99/178 (55%), Gaps = 5/178 (2%)
 Frame = +2

Query: 197 LEPGFKGFFCTCNFREKDCVKEVYNLLNEYASKLY-PD--LDVEQVPPSAVPXXXXXXXX 367
           LEPG +G   TCN  E+ CV+E Y+LLNEY   +Y P+   D +Q P  +          
Sbjct: 39  LEPGLQGILITCNMNERKCVEEAYSLLNEYGDDMYGPEKFTDKDQQPSGSEGEDDDAEAA 98

Query: 368 XXXXXXXXXXIGDILRREVDSIKKNSQKSLRFKRFQVVETGASNCIFVKTNLPSPEELTT 547
                         L++EV  IK +++  +R +RFQ VE+GA+N +F++T    PE+L  
Sbjct: 99  --------------LKKEVGDIKASTE--MRLRRFQSVESGANNVVFIRTLGIEPEKLVH 142

Query: 548 AIIKDLIATRIQKTRHVMRLLPIMITCKANLPDIMESAGKLFDKYFLKEPT--SFSVV 715
            I++D+  T+ +KTR ++R+LPI  TCKA L D+ + A    + +F K P   +F +V
Sbjct: 143 HILQDMYKTKKKKTRVILRMLPISGTCKAFLEDMKKYAETFLEPWF-KAPNKGTFQIV 199


>AK000281-1|BAA91050.1|  353|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20274 fis, clone HEP02123. ).
          Length = 353

 Score =  101 bits (242), Expect = 3e-21
 Identities = 64/178 (35%), Positives = 99/178 (55%), Gaps = 5/178 (2%)
 Frame = +2

Query: 197 LEPGFKGFFCTCNFREKDCVKEVYNLLNEYASKLY-PD--LDVEQVPPSAVPXXXXXXXX 367
           LEPG +G   TCN  E+ CV+E Y+LLNEY   +Y P+   D +Q P  +          
Sbjct: 39  LEPGLQGILITCNMNERKCVEEAYSLLNEYGDDMYGPEKFTDKDQRPSGSEGEDDDAEAA 98

Query: 368 XXXXXXXXXXIGDILRREVDSIKKNSQKSLRFKRFQVVETGASNCIFVKTNLPSPEELTT 547
                         L++EV  IK +++  +R +RFQ VE+GA+N +F++T    PE+L  
Sbjct: 99  --------------LKKEVGDIKASTE--MRLRRFQSVESGANNVVFIRTLGIEPEKLVH 142

Query: 548 AIIKDLIATRIQKTRHVMRLLPIMITCKANLPDIMESAGKLFDKYFLKEPT--SFSVV 715
            I++D+  T+ +KTR ++R+LPI  TCKA L D+ + A    + +F K P   +F +V
Sbjct: 143 HILQDMYKTKKKKTRVILRMLPISGTCKAFLEDMKKYAETFLEPWF-KAPNKGTFQIV 199


>AC004381-1|AAC31666.1|  242|Homo sapiens Unknown gene product
           protein.
          Length = 242

 Score = 69.3 bits (162), Expect = 1e-11
 Identities = 36/89 (40%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
 Frame = +2

Query: 455 LRFKRFQVVETGASNCIFVKTNLPSPEELTTAIIKDLIATRIQKTRHVMRLLPIMITCKA 634
           +R +RFQ VE+GA+N +F++T    PE+L   I++D+  T+ +KTR ++R+LPI  TCKA
Sbjct: 1   MRLRRFQSVESGANNVVFIRTLGIEPEKLVHHILQDMYKTKKKKTRVILRMLPISGTCKA 60

Query: 635 NLPDIMESAGKLFDKYFLKEPT--SFSVV 715
            L D+ + A    + +F K P   +F +V
Sbjct: 61  FLEDMKKYAETFLEPWF-KAPNKGTFQIV 88


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,929,738
Number of Sequences: 237096
Number of extensions: 1692169
Number of successful extensions: 2567
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2567
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)