Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3j16
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.10 |||mitochondrial intermembrane space protein sorting p... 121 8e-29
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ... 71 1e-13
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 1.8
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 1.8
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 27 2.4
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 27 3.1
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy... 26 5.5
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.5
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch... 26 5.5
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 25 7.3
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 25 7.3
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 25 9.6
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 9.6
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 9.6
>SPBC36.10 |||mitochondrial intermembrane space protein sorting
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 121 bits (292), Expect = 8e-29
Identities = 68/172 (39%), Positives = 98/172 (56%), Gaps = 3/172 (1%)
Frame = +2
Query: 137 MKIWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVD-GVLHTHRLVSSKWF 313
MKI+ S H F +P+E V+ A W+KYPN VI D ++RKV+D GVL+T RL++
Sbjct: 1 MKIFESCHLFQYPFEQVSAAHWQKYPNEHATHVIAVDTLDRKVLDNGVLYTERLITCHQA 60
Query: 314 FPRWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPSDSSK 493
PRW LI A+ CY E S V+ R +TL T+NLTF + VDETV Y+PHP +
Sbjct: 61 LPRWILKLIDGAQDCYIRETSYVDLKARTLTLLTSNLTFSDRLRVDETVTYSPHP-ELEA 119
Query: 494 TLLKQEAVVTVQGV--PLSSYMEDLLTNKISLNAGKGRQAIEWVIGKFDTEI 643
T+ +QEA + LS+ +E + A +G++ E V+ K + +
Sbjct: 120 TVFQQEARIEALACMKRLSNLIEQWSVDGFGKKASRGKEGFESVLEKINMSV 171
>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 171
Score = 70.9 bits (166), Expect = 1e-13
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
Frame = +2
Query: 143 IWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVD-GVLHTHRLVSSKWFFP 319
I T + N W TV+ A +YPNP + V+ DV+ER V D G L+T RL+ + P
Sbjct: 4 ICTDKTELNASWNTVSSAWLTRYPNPYSLHVVSADVLERYVDDEGRLYTERLLVKQGRLP 63
Query: 320 RWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPSDSSKTL 499
RWA L+ K Y E S ++P ++++ +T NL + V E R+ + SKT+
Sbjct: 64 RWASDLLNVNK-SYILERSVIDPSKQELKSETFNLDHVKILRVIEYSRFIQSSENCSKTI 122
Query: 500 L 502
+
Sbjct: 123 V 123
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 27.5 bits (58), Expect = 1.8
Identities = 26/117 (22%), Positives = 47/117 (40%)
Frame = +2
Query: 89 RSLSLYCNLH*ILEKNMKIWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVV 268
R + Y N +L K KI + + + P A RKYP P IGTD +
Sbjct: 316 RKMCNYHNPSILLIKAKKINANHKSSSRPISLDATIP-RKYP----PHCIGTDKAVPQKF 370
Query: 269 DGVLHTHRLVSSKWFFPRWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHY 439
H ++ + RW Q+ +G +++ + ++ PI + + +C +
Sbjct: 371 GADFHNENILLGAYISTRWRQSHMGFFG-DHSTLLFQLQPIHQVYYASNLDKNYCMF 426
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = +2
Query: 170 HPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVDGVLHTHRLVSSKWFFPRWAQALIGTA 349
H W+ + YPN AV ++ G +H L+ S+ WA A++G A
Sbjct: 431 HIWQAMLLYVTDAYPNVSASAVAAFELPSNLGAVGFIHLSALMFSR-MNVHWATAVVGFA 489
Query: 350 KI 355
+
Sbjct: 490 SL 491
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 455 FHQQQCN-DRMLGLLFLKSSVAVLGLLLISH*HN 357
FH Q N D++L + FL V ++G+L +H HN
Sbjct: 443 FHPPQMNTDQLLLVSFLGLVVNLVGILAFNHGHN 476
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 167 NHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVDGVLHTH 289
+HP T A PNP+ P+ + DV + +D ++ H
Sbjct: 165 SHPIPTPAIQRTSSIPNPLTPSYVVFDVAKPVPIDVNIYDH 205
>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 375
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/55 (25%), Positives = 22/55 (40%)
Frame = +2
Query: 410 KTTNLTFCHYIAVDETVRYTPHPSDSSKTLLKQEAVVTVQGVPLSSYMEDLLTNK 574
+TT +T E PHP +S LL PL+ Y+ ++ N+
Sbjct: 77 ETTTVTPTVTATAQELSTLNPHPENSKIVLLMGSNAQNDPSSPLNPYIRTIIKNR 131
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +2
Query: 257 RKVVDGVLHTHRLVSSKWFFPRWAQALIGTAKICYASEISEVNPIQRQMTLKTTN 421
RK+++ +LH+H +SS +F+ + + A + + +NP R + ++N
Sbjct: 42 RKIINEMLHSHSELSS-FFYAEKSNTFLTIAGLAESELFDTLNPAFRISSCPSSN 95
>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
T-protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 488 SKTLLKQEAVVTVQGVPLSSYMEDLLTNKISLN 586
S L ++++ V+GV +++ L TNKI+L+
Sbjct: 22 SVCLNSSKSLIRVEGVDAVKFLQGLTTNKITLD 54
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 140 KIWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVDGVLHTHRLVSSK 307
K ++ +H HPW T + K N +P + + ++ + +D L RL SS+
Sbjct: 259 KRYSVKHVVQHPWLTSSTPFRTKNGNCADPVALASRLMLKLRID--LDKPRLASSR 312
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = +1
Query: 370 DIRS--KPNTATDDFKNNKPN 426
D+RS ATDDF +NKPN
Sbjct: 209 DVRSLVAGTPATDDFSHNKPN 229
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 9.6
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +2
Query: 122 ILEKNMKIWTSEHTFNHPWETVAQAAWRKYPNP-MN-PAVIGTDVVERKVVDGVLHTHRL 295
IL+ + W +H F+ + + W KY NP +N P + D + + H L
Sbjct: 272 ILDVHTSYW--KHMFSLFGFQINENDW-KYANPNLNRPPFLHNDQISDDYFPEIFKRHFL 328
Query: 296 VSSKWFFP 319
+W FP
Sbjct: 329 NRKRWLFP 336
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -2
Query: 370 LTSITYFCSTN*RLGPSWKKPFGTD*SMSMKYTIYNFS 257
L+ IT F S+ + P+WKK FG + ++KY + + S
Sbjct: 1649 LSEITLFPSS---VSPTWKKSFGNA-NTNLKYGLEDMS 1682
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -2
Query: 370 LTSITYFCSTN*RLGPSWKKPFGTD*SMSMKYTIYNFS 257
L+ IT F S+ + P+WKK FG + ++KY + + S
Sbjct: 1649 LSEITLFPSS---VSPTWKKSFGNA-NTNLKYGLEDMS 1682
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,682
Number of Sequences: 5004
Number of extensions: 59447
Number of successful extensions: 140
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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