Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3j09
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    85   4e-18

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 85.4 bits (202), Expect = 4e-18
 Identities = 51/149 (34%), Positives = 66/149 (44%), Gaps = 2/149 (1%)
 Frame = +1

Query: 7   FSQXXLXPNXEXGXIXPPSRITP--FXPFQIPLLNTXILIXSGXTVTGAXXXXIENNFXQ 180
           F    L P  E G + PP  I      P ++PLLNT IL+ SG ++T A    I  N   
Sbjct: 111 FFHSSLSPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNREN 170

Query: 181 TKQRLFLTILLGFYFTILQAXEYIEASFTXAXRI*GXXFFIAXGFXGIQXXXGTLFLLIX 360
             + L++TI L F F   QA EY  A FT +  + G  F+ A G  GI    GT+ LL+ 
Sbjct: 171 ALKGLYMTIALSFLFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLVA 230

Query: 361 XXRHLXXXFSKXXXXGFEAAAXYXHXXXV 447
                    +     GFE    Y H   V
Sbjct: 231 TYNIYTYHLTNTHHNGFECGIYYWHFCDV 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,055,293
Number of Sequences: 5004
Number of extensions: 11054
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)