Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3j08
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    27   0.24 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.96 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   2.2  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   6.7  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
 Frame = +2

Query: 338 SSWILVLTAKSASQILIARLICGLAFGCNIIVVIMYIGELCQTSTRATATVIITFLFSIG 517
           S W +   + SA+ ILI   +CG+    N   V+   G   + S    + +++ +L +  
Sbjct: 654 SGWAIGAMSFSATGILITLFVCGVFLKHNDTPVVRASGR--ELSYVLLSGILLCYLVTF- 710

Query: 518 ALASYSLGWVCSYET-VCYFCITLSVIYIIFMFALVKESPVFLVGKGREK 664
           AL       VC  +     FC T  V+Y   +    + S +F   K   K
Sbjct: 711 ALVLRPTDIVCGIQRFAAGFCFT--VVYAALLTKTNRISRIFNASKHSAK 758


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 292 IRKKEDFSGVWLHHSFILDTSAHGE-VSKPNPHSSTDLRTG 411
           ++KK DF  V+L  +    TS HG+ + +    +  D ++G
Sbjct: 460 MKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALADFKSG 500


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 288 MYSEERRFQWRVASSFFHP 344
           +YS E+   WR+  S+F P
Sbjct: 219 VYSWEQNRSWRITHSYFMP 237


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +2

Query: 503 LFSIGALASYSLGWVCSYETVCYFCITLSVIYIIFMFALVKESPVFLV 646
           LF  G+    +    CS     +  +T S  YI F+F L    PVF +
Sbjct: 34  LFGWGSYGPEAGNVSCSVSWEVHDPVTNSDTYIGFLFVLGLIVPVFTI 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,479
Number of Sequences: 438
Number of extensions: 4754
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)