Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3j04
         (374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   2.9  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   3.9  
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce...    25   5.1  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          24   6.8  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    24   9.0  

>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 116 APCSFNFCSLRA 81
           +PCSF  CSLRA
Sbjct: 62  SPCSFTICSLRA 73


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 266 TSPVLDIAPGSDLFCFIWN*NA 331
           T P+  + P  ++FC IW+ NA
Sbjct: 411 THPLRSVIPLDNIFCNIWSDNA 432


>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 366 LHRIDKFIKNLNAF*FQIKQKRSDPGAMSRTG 271
           LH+I KF  +L +    + +++    AMSR G
Sbjct: 119 LHQIKKFSSDLQSLKSSMGERQKQQAAMSRRG 150


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -3

Query: 261 HHLMAWGLPWQQQSTVTQC 205
           H ++ WG  W++  T  +C
Sbjct: 160 HGVIGWGATWEKSKTQMEC 178


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 54  NIVAFIPAYRSKRTKIK 104
           N V+ IP YR+ +TK+K
Sbjct: 406 NAVSTIPVYRTTKTKMK 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,426,590
Number of Sequences: 5004
Number of extensions: 24400
Number of successful extensions: 42
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)