Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3j04
         (374 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0122 - 14617879-14618871                                         28   2.1  
07_01_0243 - 1783903-1784658                                           27   3.6  
05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622     27   3.6  
01_06_0836 - 32321431-32321556,32321656-32321872,32321975-323235...    27   4.8  

>03_03_0122 - 14617879-14618871
          Length = 330

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 76  RIARREQKLKEHGASSCISAQRE*RQEAQPLLHKH 180
           R ++REQ+ +EHGA++ +  Q + RQ+ Q     H
Sbjct: 10  RPSQREQQQEEHGATAAMPPQDDERQDHQAAAAVH 44


>07_01_0243 - 1783903-1784658
          Length = 251

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
 Frame = +2

Query: 17  LVLKSRTLNFLNQHSSFYTCVSLEENKN*RNMGLLAALVLSGNSGRKHSRCCTSILRKFS 196
           LV  S        H+ F   V L  +   R+ G L   +   +  R     C   L   S
Sbjct: 159 LVQSSLLCLISRNHAEFVIRVELGPHARFRSTGFLLEFLRFNDELRGDPLLCPVKLTPIS 218

Query: 197 GRQHCVTVDCC-CHGS 241
             QH  +V CC C GS
Sbjct: 219 TAQHHTSVLCCFCGGS 234


>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
          Length = 66

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
 Frame = +2

Query: 146 SGRKHSRCCTSILRKFSGR------QHCVTVDCCC 232
           +G+K  RCC S  R+ + R      + C+   CCC
Sbjct: 24  AGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58


>01_06_0836 -
           32321431-32321556,32321656-32321872,32321975-32323590,
           32323670-32323753,32323834-32324104,32324294-32324547,
           32324709-32324918,32325839-32326024
          Length = 987

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 85  RREQKLKE-HGASSCISAQRE*RQEAQPLLH 174
           RREQ+L E  G    ++ QRE  QE + LLH
Sbjct: 682 RREQELSEIKGTIEALNNQREKLQEQRKLLH 712


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,501,992
Number of Sequences: 37544
Number of extensions: 176238
Number of successful extensions: 378
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)