Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3j04
         (374 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118487-1|AAM49856.1|  870|Drosophila melanogaster LD01372p pro...    30   0.84 
AE014296-2536|AAF49616.1| 2139|Drosophila melanogaster CG6498-PA...    30   0.84 
AE014296-3642|AAF51797.3|  572|Drosophila melanogaster CG7458-PA...    28   4.5  

>AY118487-1|AAM49856.1|  870|Drosophila melanogaster LD01372p
           protein.
          Length = 870

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +2

Query: 134 LSGNSGRKHSRCCTSILRKFSGRQH 208
           LSG+S   HSR  T++LRK S +QH
Sbjct: 188 LSGSSSSLHSRGYTALLRKISYQQH 212


>AE014296-2536|AAF49616.1| 2139|Drosophila melanogaster CG6498-PA
           protein.
          Length = 2139

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +2

Query: 134 LSGNSGRKHSRCCTSILRKFSGRQH 208
           LSG+S   HSR  T++LRK S +QH
Sbjct: 188 LSGSSSSLHSRGYTALLRKISYQQH 212


>AE014296-3642|AAF51797.3|  572|Drosophila melanogaster CG7458-PA
           protein.
          Length = 572

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +2

Query: 17  LVLKSRTLNFLNQHSSFYTCVSLEENKN*RNMGLLAALVLSGNSGRKHSRCCTSIL 184
           L+    +LN +N   + YT   L  N   +  GLL  LV+    GR+HS C + +L
Sbjct: 390 LIALGLSLNSVNLGGNKYTNFML--NGFIQIPGLLLPLVIMDRVGRRHSLCASMLL 443


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,920,475
Number of Sequences: 53049
Number of extensions: 304309
Number of successful extensions: 603
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 982468965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)