Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3j04
         (374 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    29   1.1  
U32305-20|AAK18863.1|  796|Caenorhabditis elegans Worm armadillo...    27   3.3  
AF013951-1|AAC47748.1|  796|Caenorhabditis elegans wrm-1 protein.      27   3.3  
Z82274-5|CAB05227.1|  333|Caenorhabditis elegans Hypothetical pr...    27   5.8  

>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
           protein Y45F10B.10 protein.
          Length = 1592

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 239 YHGSSSQL*HNAAGH*ISVVCLCSSGCAS 153
           YH +S QL     GH  +V CLCSS  +S
Sbjct: 896 YHIASEQLIGTFKGHTAAVTCLCSSNDSS 924


>U32305-20|AAK18863.1|  796|Caenorhabditis elegans Worm armadillo
           protein 1 protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 219 TVTQCCRPLNFRSMLVQQRLCFLPLFPLSTNAAR 118
           T +Q C PLNF  M         P+ P ST +AR
Sbjct: 8   TFSQPCTPLNFNPMTPSTSRVSTPVRPSSTMSAR 41


>AF013951-1|AAC47748.1|  796|Caenorhabditis elegans wrm-1 protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 219 TVTQCCRPLNFRSMLVQQRLCFLPLFPLSTNAAR 118
           T +Q C PLNF  M         P+ P ST +AR
Sbjct: 8   TFSQPCTPLNFNPMTPSTSRVSTPVRPSSTMSAR 41


>Z82274-5|CAB05227.1|  333|Caenorhabditis elegans Hypothetical
           protein JC8.7 protein.
          Length = 333

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 113 GLLAALVLSGNSGRKHSRCCTSILRKFSGRQHCVTVD 223
           G+L  +V +GNSG+K+ +   +  R  S   +C+ ++
Sbjct: 203 GMLIDVVPTGNSGKKNKKNERTGYRDLSKNAYCINIE 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,064,957
Number of Sequences: 27780
Number of extensions: 148840
Number of successful extensions: 275
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)