Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3j01
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    28   1.9  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    27   3.4  
SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo...    27   4.5  
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom...    27   4.5  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    27   4.5  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    26   5.9  
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos...    26   5.9  

>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 73  NSYILFCNKMAQELPIKVKESIQKIIQRENFVSHDVETKK 192
           NSY L         PI + E+I+KI+++  F      TK+
Sbjct: 813 NSYFLLPTVSRHYRPITIFEAIRKILKKREFAKKPTMTKR 852


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
            polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +1

Query: 619  DEVFKCLKQPFIFGEAWNDFVGNVSKSSIKLLDDDKREKYGDK 747
            + + + LKQ F   E +  F+  VSK +IK  D+D + K+G+K
Sbjct: 1053 NNIMERLKQEF--EERYKGFL--VSKKAIKANDEDLKAKFGNK 1091


>SPCC1442.13c |||RNA-binding protein, G-pathc
           type|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 350 EKHWLIESSVRFSKIFKSKLEYLKTRDLKW*KNKNVQ 460
           ++H+ +++ V+ SK  KSKL  +  + LK  K K VQ
Sbjct: 84  DRHFALQTDVKLSKKRKSKLVEMTPKGLK--KRKRVQ 118


>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = +1

Query: 709 LLDDDKREKYGDKIMNIVHKYEDYISDTKHFSTLCHGDYKNCQY 840
           L+D    EK  + ++ + + +   +    H + L   D++NC Y
Sbjct: 88  LMDKGYTEKEAEGLLEVTNMFVTDMLRHSHLNYLSEADFENCSY 131


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -3

Query: 744 ISIFLSFIIVQKFY*RFRNVSHEIIPSFTENKRLFQALEYLIEIFRTLLF 595
           + I +  ++   FY  F  +   +IP F ENK  F A E LI  F    F
Sbjct: 361 MGILVGSVLTVAFY--FIYLRKVMIPKFVENKGKFPAEEILIISFPAAFF 408


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 430 ISRFQVFQLRFEDLR-KPDRALYKPMLLLQRYLRP 329
           +SRF +  +  +D+  K DRAL + +L + RYL P
Sbjct: 487 LSRFDLLFIVTDDIDDKKDRALSEHVLRMHRYLPP 521


>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +1

Query: 325 YSVEDIFAREALAYRELCPVFEDLQIEAGIPENERFKMVKKQECTKDVIILKNVCKKGYK 504
           Y V    A E    R +   FED Q    I  +   K  +  +CT   +IL N      +
Sbjct: 260 YIVSPDMAYEVAKRRNIIIPFEDAQTGYSIYLSGNVKNAEFSKCTLYDLILPNEGFNYRQ 319

Query: 505 TYYRMDVVS 531
           +Y R+D ++
Sbjct: 320 SYLRIDAIA 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,649,443
Number of Sequences: 5004
Number of extensions: 81992
Number of successful extensions: 252
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)