Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3j01
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0257 + 16170914-16171113,16171362-16171554,16171929-161720... 33 0.38
01_07_0207 - 41993659-41994849 31 0.89
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302... 31 1.5
03_06_0205 - 32347636-32347646,32347762-32347801,32347959-323480... 31 1.5
01_05_0203 - 19241442-19241710,19241845-19242055,19242602-192431... 30 2.7
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422... 29 3.6
06_03_1288 + 29014144-29014376,29015192-29015771,29015929-290163... 29 3.6
01_01_0841 - 6564029-6564348,6564654-6564686,6564793-6565450,656... 29 3.6
07_01_0319 + 2245724-2245753,2246797-2246976,2247547-2247630 29 4.7
06_03_0651 - 23164377-23165969 29 6.2
>09_04_0257 +
16170914-16171113,16171362-16171554,16171929-16172034,
16172293-16172415,16172739-16172830,16173276-16173376,
16173458-16173524,16174016-16174108,16174247-16174375
Length = 367
Score = 32.7 bits (71), Expect = 0.38
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +1
Query: 502 KTYYRMDVVSPKFAELAIKELARFHGLSLVLEKQRPKYFDEVFKCLKQPFI 654
+T D+ P+ A KE+ RFH + + K+ P+ +D++FK +K+ I
Sbjct: 161 RTLTPSDMKEPRIAAEIAKEIRRFHQVDIPGSKE-PQLWDDIFKFMKKASI 210
>01_07_0207 - 41993659-41994849
Length = 396
Score = 31.5 bits (68), Expect = 0.89
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +1
Query: 226 LYVVDVRGTTKDGRKEMSLFVKQIIHNAE---RISIYSVEDIFAREALAYRELCPVFEDL 396
+Y +D G ++ +E + F+ +H A I IY+ +D++AR AL D
Sbjct: 7 VYELDHGGEGEEEEEEDACFLDIYVHGARGIHNICIYAAQDVYARLALTSSPDDAPALDT 66
Query: 397 QIEAGIPENERF 432
++ AG N RF
Sbjct: 67 RVAAGGGANPRF 78
>06_03_1404 -
29928792-29929040,29929147-29929551,29930130-29930280,
29930363-29930501,29930578-29930743,29930826-29931041,
29931142-29931323,29931412-29931538,29931974-29932112,
29932227-29932353,29932501-29932612,29932704-29932784,
29933330-29933483,29933569-29933689,29934003-29934045,
29934356-29934460
Length = 838
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +1
Query: 661 EAWNDFVGNVSKSSIKLLDDDKREKYGDKIMNIVHKYEDYIS 786
+ WN+ +G ++ + L D+ K DK+ ++V KY ++I+
Sbjct: 264 DTWNEPLGRGTEIRLHLRDEAKEYVEEDKLKDLVKKYSEFIN 305
>03_06_0205 -
32347636-32347646,32347762-32347801,32347959-32348060,
32348473-32348599,32348893-32350835,32351347-32351367
Length = 747
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 241 VRGTTKDGRKEMSLFVKQIIHNAERISIY-SVEDIFAREALAYRELCPVFEDLQIEAGI 414
+RG D K++ Q+ ++ +SI S ED R+ +E +EDLQIEAG+
Sbjct: 421 LRGLLADNMKDVKELSSQLSEASKEMSIQLSSEDDLLRQIAKIKE---EYEDLQIEAGV 476
>01_05_0203 -
19241442-19241710,19241845-19242055,19242602-19243181,
19243204-19244189
Length = 681
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 724 KREKYGDKIMNIVHKYEDYISDTKHFSTLCHGDYK 828
++ K+G +IM+ H E+Y F + HG +K
Sbjct: 588 RKSKHGTRIMHPAHPIENYCGGDMDFIEMAHGTHK 622
>11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,
4221561-4222094,4222388-4222842,4223073-4223189,
4223319-4223477
Length = 2170
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/80 (26%), Positives = 40/80 (50%)
Frame = +1
Query: 124 VKESIQKIIQRENFVSHDVETKKIYPDGSGFMGDLYVVDVRGTTKDGRKEMSLFVKQIIH 303
+ SI + Q S D+E K YP+ S + D V+ V G+ K + ++L++ +I
Sbjct: 1017 ISASIDMMKQDSAPTSLDIEVWKPYPENSLYNYDKDVLGVSGSGKVLEETVALWLLSLIC 1076
Query: 304 NAERISIYSVEDIFAREALA 363
++ S +V D+ E ++
Sbjct: 1077 SSHLSSKLTVMDLGGVETIS 1096
>06_03_1288 +
29014144-29014376,29015192-29015771,29015929-29016320,
29016636-29016663,29017207-29017417,29017551-29017819
Length = 570
Score = 29.5 bits (63), Expect = 3.6
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +1
Query: 724 KREKYGDKIMNIVHKYEDYISDTKHFSTLCHGDYK 828
++ K+G +IM+ H E+Y F+ + HG ++
Sbjct: 477 RKSKHGTRIMHPAHPIENYCGGDMDFTEMAHGTHE 511
>01_01_0841 -
6564029-6564348,6564654-6564686,6564793-6565450,
6565530-6565694,6565789-6565878,6565982-6566182,
6566525-6566737,6566835-6567077
Length = 640
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 511 YRMDVVSPKFAELAIKELARFHGLSLVLEKQRPKYFDEVFKCLKQPFIFGEAW 669
YR+D +P ++LA + A SLV P Y D++ + KQ F F + +
Sbjct: 176 YRLDPQNPG-SDLAGETAAAMAAASLVFRSSNPGYADQLLQHSKQLFDFADKY 227
>07_01_0319 + 2245724-2245753,2246797-2246976,2247547-2247630
Length = 97
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 447 FFYHFKSLVFRYSSFDLKIFEN-RTELSISQCFSCKDI 337
F YH S+V YS +++IF++ + L +S F K +
Sbjct: 3 FLYHENSIVIEYSDVNMEIFQSIQKHLQVSMEFVMKSV 40
>06_03_0651 - 23164377-23165969
Length = 530
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 175 DVETKKIYPDGSGFMGDLYVVDVRGTTKDGRKEMSLFVKQIIHNAERISIYS 330
D++ K+ PDG F+G L G +GRK+ ++++ R+ YS
Sbjct: 372 DMQRSKVKPDGVTFIGVLSACCHGGLVDEGRKQFHA-MREVYQIEPRVEHYS 422
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,727,138
Number of Sequences: 37544
Number of extensions: 423642
Number of successful extensions: 1128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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