Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3j01
(854 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X52479-1|CAA36718.1| 672|Homo sapiens protein ( Human PKC alpha... 32 2.3
X07109-1|CAA30130.1| 673|Homo sapiens protein ( Human mRNA for ... 32 2.3
X06318-1|CAA29634.1| 671|Homo sapiens protein ( Human mRNA for ... 32 2.3
M13975-1|AAA60095.1| 673|Homo sapiens protein kinase C beta-II ... 32 2.3
BC109274-1|AAI09275.1| 672|Homo sapiens protein kinase C, alpha... 32 2.3
BC109273-1|AAI09274.1| 672|Homo sapiens protein kinase C, alpha... 32 2.3
BC036472-1|AAH36472.1| 673|Homo sapiens protein kinase C, beta ... 32 2.3
AY633609-1|AAV33302.1| 672|Homo sapiens aging-associated gene 6... 32 2.3
AC002299-2|AAB97934.1| 496|Homo sapiens Protein kinase C beta (... 32 2.3
AC002299-1|AAB97933.1| 494|Homo sapiens Protein kinase C beta (... 32 2.3
AB209475-1|BAD92712.1| 461|Homo sapiens protein kinase C, alpha... 32 2.3
Z97054-3|CAI42646.1| 1233|Homo sapiens structural maintenance of... 31 4.0
X54637-1|CAA38449.1| 1187|Homo sapiens protein ( Human tyk2 mRNA... 31 4.0
S78271-1|AAB34405.1| 1233|Homo sapiens SB1.8/DXS423E protein. 31 4.0
D80000-1|BAA11495.2| 1233|Homo sapiens KIAA0178 protein. 31 4.0
BC112127-1|AAI12128.1| 1233|Homo sapiens SMC1 structural mainten... 31 4.0
AY549314-1|AAS37680.1| 1187|Homo sapiens tyrosine kinase 2 protein. 31 4.0
AL161779-1|CAI42089.1| 1233|Homo sapiens structural maintenance ... 31 4.0
BC014243-1|AAH14243.1| 1187|Homo sapiens tyrosine kinase 2 protein. 31 5.3
AL831940-1|CAD38592.1| 215|Homo sapiens hypothetical protein pr... 31 7.1
AK075148-1|BAC11434.1| 170|Homo sapiens protein ( Homo sapiens ... 31 7.1
AK074928-1|BAC11298.1| 356|Homo sapiens protein ( Homo sapiens ... 31 7.1
AK074907-1|BAC11283.1| 170|Homo sapiens protein ( Homo sapiens ... 31 7.1
AK022027-1|BAB13955.1| 234|Homo sapiens protein ( Homo sapiens ... 31 7.1
AK001440-1|BAA91692.1| 234|Homo sapiens protein ( Homo sapiens ... 31 7.1
AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2 prot... 31 7.1
AF346602-1|AAK29083.1| 476|Homo sapiens Sec61 alpha form 1 prot... 31 7.1
AF084458-1|AAD39847.1| 476|Homo sapiens sec61 homolog protein. 31 7.1
>X52479-1|CAA36718.1| 672|Homo sapiens protein ( Human PKC alpha
mRNA for protein kinase C alpha. ).
Length = 672
Score = 32.3 bits (70), Expect = 2.3
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 450 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKD-IFDRINTYTFC 307
LFF H + +++R D + ++ + I+ CK+ + D + T TFC
Sbjct: 451 LFFLHKRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMMDGVTTRTFC 499
>X07109-1|CAA30130.1| 673|Homo sapiens protein ( Human mRNA for
protein kinase C (PKC) type beta II. ).
Length = 673
Score = 32.3 bits (70), Expect = 2.3
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 450 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKD-IFDRINTYTFC 307
LFF K +++R D + ++ + I+ CK+ I+D + T TFC
Sbjct: 454 LFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFC 502
>X06318-1|CAA29634.1| 671|Homo sapiens protein ( Human mRNA for
protein kinase C (PKC) type beta I. ).
Length = 671
Score = 32.3 bits (70), Expect = 2.3
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 450 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKD-IFDRINTYTFC 307
LFF K +++R D + ++ + I+ CK+ I+D + T TFC
Sbjct: 454 LFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFC 502
>M13975-1|AAA60095.1| 673|Homo sapiens protein kinase C beta-II
type protein.
Length = 673
Score = 32.3 bits (70), Expect = 2.3
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 450 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKD-IFDRINTYTFC 307
LFF K +++R D + ++ + I+ CK+ I+D + T TFC
Sbjct: 454 LFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFC 502
>BC109274-1|AAI09275.1| 672|Homo sapiens protein kinase C, alpha
protein.
Length = 672
Score = 32.3 bits (70), Expect = 2.3
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 450 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKD-IFDRINTYTFC 307
LFF H + +++R D + ++ + I+ CK+ + D + T TFC
Sbjct: 451 LFFLHKRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMMDGVTTRTFC 499
>BC109273-1|AAI09274.1| 672|Homo sapiens protein kinase C, alpha
protein.
Length = 672
Score = 32.3 bits (70), Expect = 2.3
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 450 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKD-IFDRINTYTFC 307
LFF H + +++R D + ++ + I+ CK+ + D + T TFC
Sbjct: 451 LFFLHKRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMMDGVTTRTFC 499
>BC036472-1|AAH36472.1| 673|Homo sapiens protein kinase C, beta 1
protein.
Length = 673
Score = 32.3 bits (70), Expect = 2.3
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 450 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKD-IFDRINTYTFC 307
LFF K +++R D + ++ + I+ CK+ I+D + T TFC
Sbjct: 454 LFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFC 502
>AY633609-1|AAV33302.1| 672|Homo sapiens aging-associated gene 6
protein protein.
Length = 672
Score = 32.3 bits (70), Expect = 2.3
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 450 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKD-IFDRINTYTFC 307
LFF H + +++R D + ++ + I+ CK+ + D + T TFC
Sbjct: 451 LFFLHKRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMMDGVTTRTFC 499
>AC002299-2|AAB97934.1| 496|Homo sapiens Protein kinase C beta (5'
partial) splice form_ protein.
Length = 496
Score = 32.3 bits (70), Expect = 2.3
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 450 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKD-IFDRINTYTFC 307
LFF K +++R D + ++ + I+ CK+ I+D + T TFC
Sbjct: 277 LFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFC 325
>AC002299-1|AAB97933.1| 494|Homo sapiens Protein kinase C beta (5'
partial) splice form_1 protein.
Length = 494
Score = 32.3 bits (70), Expect = 2.3
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 450 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKD-IFDRINTYTFC 307
LFF K +++R D + ++ + I+ CK+ I+D + T TFC
Sbjct: 277 LFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFC 325
>AB209475-1|BAD92712.1| 461|Homo sapiens protein kinase C, alpha
variant protein.
Length = 461
Score = 32.3 bits (70), Expect = 2.3
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 450 LFFYHFKSLVFRYSSFDLKIFENRTELSISQCFSCKD-IFDRINTYTFC 307
LFF H + +++R D + ++ + I+ CK+ + D + T TFC
Sbjct: 362 LFFLHKRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMMDGVTTRTFC 410
>Z97054-3|CAI42646.1| 1233|Homo sapiens structural maintenance of
chromosomes 1A protein.
Length = 1233
Score = 31.5 bits (68), Expect = 4.0
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 7/149 (4%)
Frame = +1
Query: 217 MGDLYVVDVRGTTKD-GRKEMSLFVKQIIHNAERISIYSVEDIFAREALA---YRELCPV 384
M D+ + +GT D ++E S + + ++RIS I+AREAL Y +LC
Sbjct: 935 MQDIKLPLSKGTMDDISQEEGSSQGEDSVSGSQRIS-----SIYAREALIEIDYGDLCED 989
Query: 385 FEDLQIEAGIPENERFKMVKKQECTKDVIILKNVCKKGYKTYYRMDVVSPKFAELAIK-E 561
+D Q E I + +Q+ + +L+ + K +++ V KF E + + E
Sbjct: 990 LKDAQAEEEIKQEMN---TLQQKLNEQQSVLQRIAAPNMKAMEKLESVRDKFQETSDEFE 1046
Query: 562 LARFHG--LSLVLEKQRPKYFDEVFKCLK 642
AR E+ + + FD C +
Sbjct: 1047 AARKRAKKAKQAFEQIKKERFDRFNACFE 1075
>X54637-1|CAA38449.1| 1187|Homo sapiens protein ( Human tyk2 mRNA for
non-receptor protein tyrosine kinase. ).
Length = 1187
Score = 31.5 bits (68), Expect = 4.0
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Frame = +1
Query: 262 GRKEMSLFVKQIIHNAERISI--YSVEDIFAREALAYRELCPVFEDLQIEAGIPENERFK 435
G ++ LF +QI + Y D+ AR L + D + +PE +
Sbjct: 996 GLAQLLLFAQQICEGMAYLHAHDYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYY 1055
Query: 436 MVKKQECTKDVIILKNVCKKGYKTYYRMDVVS 531
V+ ++ V C K YK YY DV S
Sbjct: 1056 RVR-EDGDSPVFWYAPECLKEYKFYYASDVWS 1086
>S78271-1|AAB34405.1| 1233|Homo sapiens SB1.8/DXS423E protein.
Length = 1233
Score = 31.5 bits (68), Expect = 4.0
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 7/149 (4%)
Frame = +1
Query: 217 MGDLYVVDVRGTTKD-GRKEMSLFVKQIIHNAERISIYSVEDIFAREALA---YRELCPV 384
M D+ + +GT D ++E S + + ++RIS I+AREAL Y +LC
Sbjct: 935 MQDIKLPLSKGTMDDISQEEGSSQGEDSVSGSQRIS-----SIYAREALIEIDYGDLCED 989
Query: 385 FEDLQIEAGIPENERFKMVKKQECTKDVIILKNVCKKGYKTYYRMDVVSPKFAELAIK-E 561
+D Q E I + +Q+ + +L+ + K +++ V KF E + + E
Sbjct: 990 LKDAQAEEEIKQEMN---TLQQKLNEQQSVLQRIAAPNMKAMEKLESVRDKFQETSDEFE 1046
Query: 562 LARFHG--LSLVLEKQRPKYFDEVFKCLK 642
AR E+ + + FD C +
Sbjct: 1047 AARKRAKKAKQAFEQIKKERFDRFNACFE 1075
>D80000-1|BAA11495.2| 1233|Homo sapiens KIAA0178 protein.
Length = 1233
Score = 31.5 bits (68), Expect = 4.0
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 7/149 (4%)
Frame = +1
Query: 217 MGDLYVVDVRGTTKD-GRKEMSLFVKQIIHNAERISIYSVEDIFAREALA---YRELCPV 384
M D+ + +GT D ++E S + + ++RIS I+AREAL Y +LC
Sbjct: 935 MQDIKLPLSKGTMDDISQEEGSSQGEDSVSGSQRIS-----SIYAREALIEIDYGDLCED 989
Query: 385 FEDLQIEAGIPENERFKMVKKQECTKDVIILKNVCKKGYKTYYRMDVVSPKFAELAIK-E 561
+D Q E I + +Q+ + +L+ + K +++ V KF E + + E
Sbjct: 990 LKDAQAEEEIKQEMN---TLQQKLNEQQSVLQRIAAPNMKAMEKLESVRDKFQETSDEFE 1046
Query: 562 LARFHG--LSLVLEKQRPKYFDEVFKCLK 642
AR E+ + + FD C +
Sbjct: 1047 AARKRAKKAKQAFEQIKKERFDRFNACFE 1075
>BC112127-1|AAI12128.1| 1233|Homo sapiens SMC1 structural maintenance
of chromosomes 1-like 1 protein.
Length = 1233
Score = 31.5 bits (68), Expect = 4.0
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 7/149 (4%)
Frame = +1
Query: 217 MGDLYVVDVRGTTKD-GRKEMSLFVKQIIHNAERISIYSVEDIFAREALA---YRELCPV 384
M D+ + +GT D ++E S + + ++RIS I+AREAL Y +LC
Sbjct: 935 MQDIKLPLSKGTMDDISQEEGSSQGEDSVSGSQRIS-----SIYAREALIEIDYGDLCED 989
Query: 385 FEDLQIEAGIPENERFKMVKKQECTKDVIILKNVCKKGYKTYYRMDVVSPKFAELAIK-E 561
+D Q E I + +Q+ + +L+ + K +++ V KF E + + E
Sbjct: 990 LKDAQAEEEIKQEMN---TLQQKLNEQQSVLQRIAAPNMKAMEKLESVRDKFQETSDEFE 1046
Query: 562 LARFHG--LSLVLEKQRPKYFDEVFKCLK 642
AR E+ + + FD C +
Sbjct: 1047 AARKRAKKAKQAFEQIKKERFDRFNACFE 1075
>AY549314-1|AAS37680.1| 1187|Homo sapiens tyrosine kinase 2 protein.
Length = 1187
Score = 31.5 bits (68), Expect = 4.0
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Frame = +1
Query: 262 GRKEMSLFVKQIIHNAERISI--YSVEDIFAREALAYRELCPVFEDLQIEAGIPENERFK 435
G ++ LF +QI + Y D+ AR L + D + +PE +
Sbjct: 996 GLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYY 1055
Query: 436 MVKKQECTKDVIILKNVCKKGYKTYYRMDVVS 531
V+ ++ V C K YK YY DV S
Sbjct: 1056 RVR-EDGDSPVFWYAPECLKEYKFYYASDVWS 1086
>AL161779-1|CAI42089.1| 1233|Homo sapiens structural maintenance of
chromosomes 1A protein.
Length = 1233
Score = 31.5 bits (68), Expect = 4.0
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 7/149 (4%)
Frame = +1
Query: 217 MGDLYVVDVRGTTKD-GRKEMSLFVKQIIHNAERISIYSVEDIFAREALA---YRELCPV 384
M D+ + +GT D ++E S + + ++RIS I+AREAL Y +LC
Sbjct: 935 MQDIKLPLSKGTMDDISQEEGSSQGEDSVSGSQRIS-----SIYAREALIEIDYGDLCED 989
Query: 385 FEDLQIEAGIPENERFKMVKKQECTKDVIILKNVCKKGYKTYYRMDVVSPKFAELAIK-E 561
+D Q E I + +Q+ + +L+ + K +++ V KF E + + E
Sbjct: 990 LKDAQAEEEIKQEMN---TLQQKLNEQQSVLQRIAAPNMKAMEKLESVRDKFQETSDEFE 1046
Query: 562 LARFHG--LSLVLEKQRPKYFDEVFKCLK 642
AR E+ + + FD C +
Sbjct: 1047 AARKRAKKAKQAFEQIKKERFDRFNACFE 1075
>BC014243-1|AAH14243.1| 1187|Homo sapiens tyrosine kinase 2 protein.
Length = 1187
Score = 31.1 bits (67), Expect = 5.3
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Frame = +1
Query: 262 GRKEMSLFVKQIIHNAERISI--YSVEDIFAREALAYRELCPVFEDLQIEAGIPENERFK 435
G ++ LF +QI + Y D+ AR L + D + +PE +
Sbjct: 996 GLAQLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYY 1055
Query: 436 MVKKQECTKDVIILKNVCKKGYKTYYRMDVVS 531
V+ ++ V C K YK YY DV S
Sbjct: 1056 RVR-EDGDSPVFWYAPECLKEYKFYYASDVWS 1086
>AL831940-1|CAD38592.1| 215|Homo sapiens hypothetical protein
protein.
Length = 215
Score = 30.7 bits (66), Expect = 7.1
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 655 FGEAWNDFVGNVSKSSIKLLDDDKREKYGDKIMNIVHKYEDYISDTKHFSTLCHG 819
F + W + G+ +K K L + + G + ++VH+ YI F LC G
Sbjct: 114 FSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIG 168
>AK075148-1|BAC11434.1| 170|Homo sapiens protein ( Homo sapiens
cDNA FLJ90667 fis, clone PLACE1005410, highly similar to
Protein transport protein Sec61 alpha subunitisoform 1.
).
Length = 170
Score = 30.7 bits (66), Expect = 7.1
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 655 FGEAWNDFVGNVSKSSIKLLDDDKREKYGDKIMNIVHKYEDYISDTKHFSTLCHG 819
F + W + G+ +K K L + + G + ++VH+ YI F LC G
Sbjct: 69 FSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIG 123
>AK074928-1|BAC11298.1| 356|Homo sapiens protein ( Homo sapiens
cDNA FLJ90447 fis, clone NT2RP3001240, highly similar to
Canis familiaris sec61 homologue mRNA. ).
Length = 356
Score = 30.7 bits (66), Expect = 7.1
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 655 FGEAWNDFVGNVSKSSIKLLDDDKREKYGDKIMNIVHKYEDYISDTKHFSTLCHG 819
F + W + G+ +K K L + + G + ++VH+ YI F LC G
Sbjct: 255 FSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIG 309
>AK074907-1|BAC11283.1| 170|Homo sapiens protein ( Homo sapiens
cDNA FLJ90426 fis, clone NT2RP3000460, highly similar to
Protein transport protein Sec61 alpha subunitisoform 1.
).
Length = 170
Score = 30.7 bits (66), Expect = 7.1
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 655 FGEAWNDFVGNVSKSSIKLLDDDKREKYGDKIMNIVHKYEDYISDTKHFSTLCHG 819
F + W + G+ +K K L + + G + ++VH+ YI F LC G
Sbjct: 69 FSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIG 123
>AK022027-1|BAB13955.1| 234|Homo sapiens protein ( Homo sapiens
cDNA FLJ11965 fis, clone HEMBB1001112, moderately
similar to Homo sapiens sec61 homolog mRNA. ).
Length = 234
Score = 30.7 bits (66), Expect = 7.1
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 655 FGEAWNDFVGNVSKSSIKLLDDDKREKYGDKIMNIVHKYEDYISDTKHFSTLCHG 819
F + W + G+ +K K L + + G + ++VH+ YI F LC G
Sbjct: 133 FSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIG 187
>AK001440-1|BAA91692.1| 234|Homo sapiens protein ( Homo sapiens
cDNA FLJ10578 fis, clone NT2RP2003433, highly similar to
PROTEIN TRANSPORT PROTEIN SEC61 ALPHA SUBUNIT. ).
Length = 234
Score = 30.7 bits (66), Expect = 7.1
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 655 FGEAWNDFVGNVSKSSIKLLDDDKREKYGDKIMNIVHKYEDYISDTKHFSTLCHG 819
F + W + G+ +K K L + + G + ++VH+ YI F LC G
Sbjct: 133 FSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIG 187
>AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2
protein.
Length = 476
Score = 30.7 bits (66), Expect = 7.1
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 655 FGEAWNDFVGNVSKSSIKLLDDDKREKYGDKIMNIVHKYEDYISDTKHFSTLCHG 819
F + W + G+ +K K L + + G + ++VH+ YI F LC G
Sbjct: 375 FSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIG 429
>AF346602-1|AAK29083.1| 476|Homo sapiens Sec61 alpha form 1
protein.
Length = 476
Score = 30.7 bits (66), Expect = 7.1
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 655 FGEAWNDFVGNVSKSSIKLLDDDKREKYGDKIMNIVHKYEDYISDTKHFSTLCHG 819
F + W + G+ +K K L + + G + ++VH+ YI F LC G
Sbjct: 375 FSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIG 429
>AF084458-1|AAD39847.1| 476|Homo sapiens sec61 homolog protein.
Length = 476
Score = 30.7 bits (66), Expect = 7.1
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 655 FGEAWNDFVGNVSKSSIKLLDDDKREKYGDKIMNIVHKYEDYISDTKHFSTLCHG 819
F + W + G+ +K K L + + G + ++VH+ YI F LC G
Sbjct: 375 FSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIG 429
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,678,676
Number of Sequences: 237096
Number of extensions: 2370938
Number of successful extensions: 5428
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 5212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5426
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10872716010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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