Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3i16
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0822 + 21762662-21762767,21763295-21763347,21764639-217647... 63 3e-10
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365... 33 0.25
01_01_1236 - 10020837-10021041,10021746-10021831,10022552-100230... 31 0.99
08_01_0317 - 2807275-2807487,2807573-2807737,2807818-2807987,280... 31 1.3
08_02_1125 + 24488073-24488244,24488358-24488398,24488621-244888... 29 3.0
07_03_0823 + 21765960-21766064,21766166-21766327,21766616-217667... 29 3.0
01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152... 29 3.0
08_02_0107 + 12494650-12495270,12507463-12508146,12508325-125084... 28 7.0
06_03_1114 + 27719099-27719252,27719340-27719570,27720508-277211... 28 7.0
06_01_0142 + 1079053-1079700 28 7.0
09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419... 28 9.2
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 28 9.2
07_03_0608 - 19924065-19924367,19924517-19924704,19924791-199252... 28 9.2
06_01_0045 + 420300-420530,422730-423006,423974-424014 28 9.2
>07_03_0822 +
21762662-21762767,21763295-21763347,21764639-21764764,
21764960-21765062,21765146-21765222
Length = 154
Score = 62.9 bits (146), Expect = 3e-10
Identities = 30/107 (28%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Frame = +2
Query: 200 QIRASEIRQTRINWQSYLQSQMITQRDHDFIVNLDQRGQKD---LPDKNPDACAEVFLNL 370
++ ++ + I W+SY+ +++I+ + D + + L D++ + VFLN+
Sbjct: 48 ELTTEQVLKRDIPWESYMANKLISGTCLQLLRRYDHKPESQRGPLLDEDGPSYVRVFLNI 107
Query: 371 LTHISKDHTIQYILVLIDDILSEDKSRVKIFRETKFSG-NVWQPFLN 508
L +ISK+ T++Y+L LID++L+ + R +F + SG +++ PFL+
Sbjct: 108 LRNISKEDTVEYVLALIDEMLAVNPKRAALFYDNSLSGEDIYDPFLS 154
>11_01_0471 -
3648871-3649078,3649841-3649926,3650111-3650155,
3650306-3650815,3651700-3653757
Length = 968
Score = 33.1 bits (72), Expect = 0.25
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Frame = +2
Query: 335 NPDACAEVFLNLLTHI--SKDHTIQYILVLIDDILSE-DKSRVKIFRETKFSGNVWQPFL 505
N + +F+ ++ ++ S+DHTIQ +L+L +I+ + D + K+ E + Q
Sbjct: 47 NGETLPHLFITVVRYVLPSEDHTIQKLLLLYLEIVDKRDVASGKVLPEMIL---ICQNLR 103
Query: 506 NLLNRQDEFVQHMTARIIAKLACWHPQLMD 595
N L +E+++ +T R + +L P+L++
Sbjct: 104 NNLQHPNEYIRGVTLRFLCRLN--EPELLE 131
>01_01_1236 -
10020837-10021041,10021746-10021831,10022552-10023061,
10023914-10025965
Length = 950
Score = 31.1 bits (67), Expect = 0.99
Identities = 20/89 (22%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Frame = +2
Query: 335 NPDACAEVFLNLLTHI--SKDHTIQYILVLIDDILSEDKSRVKIFRETKFSGNVWQPFLN 508
N + +F+ ++ ++ S+DHTIQ +L+L +I+ + + + E + Q N
Sbjct: 47 NGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRGLPEMIL---ICQNLRN 103
Query: 509 LLNRQDEFVQHMTARIIAKLACWHPQLMD 595
L+ +E+++ +T R + +L+ P++++
Sbjct: 104 NLHHPNEYIRGVTLRFLCRLS--EPEVLE 130
>08_01_0317 -
2807275-2807487,2807573-2807737,2807818-2807987,
2808256-2808724,2810581-2810727,2810968-2810976,
2811054-2811890
Length = 669
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +2
Query: 590 MDKSDLHFYLSWLKDQLKTNNNDYIQSVARCLQMMLRIDEYRFAFLSV 733
+D SD+H W+ L++N + + RC +L ID Y FAF SV
Sbjct: 99 LDYSDIH---RWVHHVLRSNARE-VGIFVRCGSKLLSIDGYPFAFNSV 142
>08_02_1125 +
24488073-24488244,24488358-24488398,24488621-24488889,
24489061-24489157,24489407-24489753,24489816-24490173,
24490319-24490894,24491374-24491649
Length = 711
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 239 WQSYLQSQMITQRDHDFIVNLDQRGQKDLPDKNPDACAEVFLNLLTHI 382
W + S ++ Q + F++N + Q+D D NP +L++L H+
Sbjct: 471 WLNSSYSPVLKQLESQFMINYYFKTQQDKRDNNPKFQNPKYLSILNHL 518
>07_03_0823 +
21765960-21766064,21766166-21766327,21766616-21766741,
21766831-21766956,21767519-21767698,21768204-21768452
Length = 315
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 617 LSWLKDQLK--TNNNDYIQSVARCLQMMLRIDEYRFAFLSVDGISTLL 754
+ WL QL+ T+ N + + CL +LR R F+ DG+ L+
Sbjct: 29 VDWLCSQLRNPTHPNCSVPTAMHCLATLLREQYVRALFVQADGVKLLI 76
>01_04_0017 -
15113479-15113580,15113950-15114117,15115011-15115229,
15115303-15115446,15115558-15115840,15115936-15115991,
15116067-15116216,15116299-15116385,15116463-15116498,
15116746-15116808,15116887-15116967,15117053-15117142,
15117349-15117426,15117510-15117731,15117788-15117835,
15117948-15118133,15120910-15121009,15121107-15121246
Length = 750
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = -2
Query: 472 RLTKYLHP-RFIFRKNVINEHKNVLNGVVLADMRQEVEKDFGTGIRILVRQIFLAALV*V 296
R+T+ L P IF+++V NE ++ A ++ EK G++ Q+F+ ++ +
Sbjct: 301 RITRGLEPVSQIFKQHVTNEGTALVKQAEDAASNKKPEKKEIVGLQ---EQVFVRKIIEL 357
Query: 295 HDKIVIALSD 266
HDK V ++D
Sbjct: 358 HDKYVAYVTD 367
>08_02_0107 +
12494650-12495270,12507463-12508146,12508325-12508472,
12508493-12508584,12508713-12509426
Length = 752
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +2
Query: 356 VFLNLLTHISKDHTIQYILVLIDDILSEDKS 448
+F+NL+ + ++ ++++V IDDIL +S
Sbjct: 125 IFMNLMNKVFMEYVDKFVVVFIDDILVYSQS 155
>06_03_1114 +
27719099-27719252,27719340-27719570,27720508-27721148,
27721225-27722124
Length = 641
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = -2
Query: 481 REFRLTKYLHPRFIFRKNVINEHKNVLNGVVLADMRQEVEKDFGTGIRILVRQIFL 314
++F L P + R V H+N VV+ D V +GT IR + IFL
Sbjct: 94 KDFTLDPANFPADLLRPFVDRLHRNGQKYVVIIDPGISVNATYGTFIRAIKEDIFL 149
>06_01_0142 + 1079053-1079700
Length = 215
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 658 VVVIGLELIFKPGEIEVQITFVHQLRMP 575
V+VIG+ + PGEI+ +T ++ +P
Sbjct: 44 VIVIGISALLSPGEIDFSVTKASRMILP 71
>09_03_0111 -
12440818-12441129,12441242-12441585,12441663-12441989,
12443444-12443602,12443687-12443784,12444745-12444821
Length = 438
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Frame = +2
Query: 584 QLMDKSDLHFYLSWLKDQLKTNNN-DYIQSVA----RCLQM 691
QL DKSD + L DQ+K N N ++++ +A +CL M
Sbjct: 329 QLTDKSDENKLEDMLNDQIKNNENMEFLEEMAELARKCLDM 369
>07_03_1512 + 27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +2
Query: 359 FLNLLTHISKDHTIQYILVLIDDILSEDKSR 451
F+NL+ + ++ ++++V IDDIL K++
Sbjct: 973 FMNLMNKVFMEYLDKFVVVFIDDILIYSKTK 1003
>07_03_0608 -
19924065-19924367,19924517-19924704,19924791-19925229,
19925357-19925851
Length = 474
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 170 IDMIAATSVLQIRASEIRQTRINWQSYLQSQMITQ 274
I+++ S++ + E++Q R Q YL +M+T+
Sbjct: 107 INVLIGCSIMTLSGDELKQVRSALQGYLSPEMVTK 141
>06_01_0045 + 420300-420530,422730-423006,423974-424014
Length = 182
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 545 SCAGQIHPDGSANSGRAAKRCQRISSHEISSPS 447
S ++ P SAN GRA C R++ EIS S
Sbjct: 51 SATEEVRPHLSAN-GRATSNCSRLARREISGTS 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,092,928
Number of Sequences: 37544
Number of extensions: 391468
Number of successful extensions: 1035
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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