Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3i14
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    26   4.4  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    25   7.8  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/70 (22%), Positives = 35/70 (50%)
 Frame = +1

Query: 118 FQMIVQKKPRKNKQVKNELQREFNFIKGIFSVMPVSILTKGADEDADYEIYTGSKNENEE 297
           F+ + Q++ R+N+  +   QRE N     +     +++ + + E    E+ T SK+ + +
Sbjct: 395 FKRLKQQEDRRNENYRRRQQRESNQESESY---VDNVVIQRSVETQSTEVVTSSKSTSVD 451

Query: 298 KDLPKRARSI 327
              PK+ + I
Sbjct: 452 TKPPKKTQKI 461


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 604 KEKGSKTEKNPKKILENLKHQDEKFRE 684
           KEK  K  KN KKI E L   ++ + +
Sbjct: 19  KEKRQKPLKNDKKIAEELPQDEDDYEQ 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,440
Number of Sequences: 5004
Number of extensions: 30958
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)