Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3i14
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99288-9|CAB16551.2|  335|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81111-3|CAB03267.1|  334|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z29116-3|CAA82372.1|  485|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U20902-1|AAA84393.1|  485|Caenorhabditis elegans cyclin A protein.     28   5.4  
AF106589-7|AAN73853.1|  843|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF106589-6|AAN73852.1|  841|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z99288-9|CAB16551.2|  335|Caenorhabditis elegans Hypothetical
           protein ZK262.10 protein.
          Length = 335

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 680 LNFSSWCFKFSRIFLGFFSVLDPFSL 603
           +N   W + F+ IF+ FF V DP ++
Sbjct: 274 VNIGYWTYWFASIFISFFPVFDPLAM 299


>Z81111-3|CAB03267.1|  334|Caenorhabditis elegans Hypothetical
           protein T01G5.3 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 683 SLNFSSWCFKFSRIFLGFFSVLDPFSL 603
           +L+  +W +  S + + FF VLDP SL
Sbjct: 273 NLDIGNWIYWTSTVAISFFPVLDPLSL 299


>Z29116-3|CAA82372.1|  485|Caenorhabditis elegans Hypothetical
           protein ZK507.6 protein.
          Length = 485

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 523 KISAPKPVFNTDAKLVFSKFNFDNFGNKEKGSKTEKNPKKI 645
           K+S     F T  +  FS F+FD    K++  K E+  KKI
Sbjct: 154 KVSVASSTFTTSVRATFSSFHFDENQRKKEFGK-EEAVKKI 193


>U20902-1|AAA84393.1|  485|Caenorhabditis elegans cyclin A protein.
          Length = 485

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 523 KISAPKPVFNTDAKLVFSKFNFDNFGNKEKGSKTEKNPKKI 645
           K+S     F T  +  FS F+FD    K++  K E+  KKI
Sbjct: 154 KVSVASSTFTTSVRATFSSFHFDENQRKKEFGK-EEAVKKI 193


>AF106589-7|AAN73853.1|  843|Caenorhabditis elegans Hypothetical
           protein Y44E3A.6b protein.
          Length = 843

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 187 NFIKGIFSVMPVSILTKGADEDADYEIYTGSKNENEEKD 303
           +F   IFS+ P+S  T    ED+  +++    N+ E  D
Sbjct: 395 SFCHSIFSIAPISSNTFENAEDSGDDLFNNDSNDEESGD 433


>AF106589-6|AAN73852.1|  841|Caenorhabditis elegans Hypothetical
           protein Y44E3A.6a protein.
          Length = 841

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 187 NFIKGIFSVMPVSILTKGADEDADYEIYTGSKNENEEKD 303
           +F   IFS+ P+S  T    ED+  +++    N+ E  D
Sbjct: 395 SFCHSIFSIAPISSNTFENAEDSGDDLFNNDSNDEESGD 433


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,277,089
Number of Sequences: 27780
Number of extensions: 169726
Number of successful extensions: 672
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)