Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3i12
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   3.0  
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    27   3.9  
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    26   6.9  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    26   6.9  
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    26   6.9  
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    25   9.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   9.1  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +2

Query: 65   GFSCLTAIMNSLNKLSVYSKLVPK--NARVISTS 160
            G S LT + N+ N+ S+Y KLV +   A V+STS
Sbjct: 1849 GRSFLTILSNTKNRDSLYQKLVARAPGADVLSTS 1882


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 386 ILQAHNQVLLCVNVLDLHAACN 321
           +L +H +++ CVN ++LH  C+
Sbjct: 149 LLDSHPKIIPCVNQIELHPFCS 170


>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 193 EITSSKNRTDKRVTQSNA**QGSNLCSSYTQHKTGFSGQLFKK 321
           E  +++N+ D    QSN     S   + YT +   FS QLFK+
Sbjct: 399 ETNTTENQKDNARGQSNKGHGFSTSLNPYTLYFKSFSSQLFKE 441


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -1

Query: 306 STESGLMLCV*RA*ITSLSLSIRLC-DSFVGSILRTSNFE 190
           + ES L  CV +  ++S++ S+RLC   F  S++R+S ++
Sbjct: 496 NVESVLNACVEKYTLSSITCSLRLCLLEFPDSLIRSSFYD 535


>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 213 ILRTSNFENHPSSVFNSALVDI 148
           +LRT   +N P S F +A  DI
Sbjct: 180 VLRTGPIQNRPDSTFTAATTDI 201


>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 24/95 (25%), Positives = 37/95 (38%)
 Frame = +2

Query: 422 LHLFKYVGGFEKIDKAKQLFKQDSSYQLLESERGKMVRSRHLQYLLAFSFWPAGEVRSPN 601
           L L K++       +  Q+  +DS    L+S  G        Q L A+ +         +
Sbjct: 143 LKLLKFLSSVGPHVRVSQMLARDSVTTRLQSPSGLSFAELTYQLLQAYDY---------S 193

Query: 602 NIYEIRSYSLKPGTMIEWGNNWARGLTYRRAQNEA 706
            +YE  S +L+ G   +WGN  A     RR    A
Sbjct: 194 YLYENHSVNLQIGGSDQWGNITAGTDLVRRTHPNA 228


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 360  QNLVVSL*DHGQYQLEIWIKLCIYSNMLVDLKKLTRPNNCLNK 488
            QNL   L      Q+   ++  + S ++V++KKL +  +C  K
Sbjct: 1241 QNLCDFLYTRDDVQMNADVQFSVTSGLIVEIKKLAQSTDCKAK 1283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,295,283
Number of Sequences: 5004
Number of extensions: 69789
Number of successful extensions: 217
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)